| assign_blocks | Helper to assign block numbers to data according to variables... |
| base_PAM | Constructor of S3 objects of class base_PAM |
| biosurvey | biosurvey: Tools for Biological Survey Planning |
| block_sample | Selection of blocks in environmental space |
| b_pam | Example of object obtained from using the function base_PAM |
| closest_to_centroid | Detection of the closest points to the centroid of a cloud of... |
| compare_SAC | Comparative plots of species accumulation curves |
| DI_dendrogram | Plot dissimilarities withing and among sets of selected sites... |
| dis_loop | Helper to calculate dissimilarities in loop |
| distance_filter | Helper to filter sets of sites by median distance among all... |
| dist_list | A list of vectors of distances |
| EG_selection | Selection of survey sites maximizing uniformity in... |
| explore_data_EG | Plots to explore environmental factors in environmental and... |
| files_2data | Creates a data.frame of species' references from files in a... |
| find_clusters | Detection of clusters in 2D spaces |
| find_modes | Find modes in a multimodal distribution |
| grid_from_region | Creates grid for a given geographic region |
| legend_bar | Helper to add a bar image legend to plots |
| make_blocks | Creates a block-like regionalization of environmental space |
| master_matrix | Constructor of S3 objects of class master_matrix |
| master_selection | Constructor of S3 objects of class master_selection |
| match_rformat | Helper function to find raster extension |
| m_matrix | Example of a master_matrix object with no preselected sites |
| m_matrix_pre | Example of a master_matrix object containing preselected... |
| m_selection | Example of a master_selection object from using functions for... |
| mx | Example of spatial polygon for a region of interest |
| PAM_CS | Constructor of S3 objects of class PAM_CS |
| PAM_from_table | Creates presence-absence matrix from a data.frame |
| PAM_indices | Biodiversity indices derived from PAM |
| PAM_subset | Constructor of S3 objects of class PAM_subset |
| plot_blocks_EG | Representation of environmental blocks in geography and... |
| plot_DI | Plotting dissimilarity indices withing and among sets of... |
| plot_PAM_CS | Representations of diversity and dispersion indices |
| plot_PAM_geo | Plot of PAM indices in geography |
| plot_SAC | Plotting lists of species accumulation curves |
| plot_sites_EG | Representation of sites selected to be surveyed |
| point_sample | Sample points from a 2D environmental space |
| point_sample_cluster | Sample points from a 2D environmental space potentially... |
| point_thinning | Helps in thinning points either in geographic or... |
| prepare_base_PAM | Presence-absence matrix (PAM) linked to a spatial grid |
| prepare_master_matrix | Prepare a base object to perform further analyses |
| prepare_PAM_CS | Preparing data for new range-diversity plot |
| preselected | Example of a data.frame of preselected sites |
| preselected_dist_mask | Helper to create objects to detect points to close to... |
| print | Print a short version of elements in master and base objects |
| purplow | Simple color palettes |
| random_selection | Random selection of survey sites |
| refill_PAM_indices | Helper to refill a list of PAM indices with new or more... |
| rlist_2data | Creates a data.frame of species' references from a list of... |
| selected_sites_DI | Dissimilarity indices from PAM_subset |
| selected_sites_PAM | Helper to subset PAM according to selected sites |
| selected_sites_SAC | Species accumulation curves from PAM_subset |
| sp_data | Example of a data.frame of species' found in distinct... |
| spdf_2data | Creates a data.frame of species' references from... |
| species_data | Example of species ranges as SpatialPolygonsDataFrame |
| sp_layers | Example of stack of layers of suitable and unsuitable... |
| sp_occurrences | Occurrence records for the species Parides gundlachianus |
| stack_2data | Creates a data.frame of species' references from RasterStack |
| subset_PAM | Subset PAM according to selected sites |
| summary | Summary of attributes and results |
| uniformE_selection | Selection of survey sites maximizing uniformity in... |
| uniformG_selection | Selection of survey sites maximizing uniformity in geography |
| unimodal_test | Unimodality test for list of one or multiple sets of values |
| variables | Example of variables to be used for preparing a master matrix |
| wgs84_2aed_laea | Project spatial points from geographic coordinates |
