MCMC diagnostic package that contains tools to diagnose convergence as well as to evaluate sensitivity studies, Includes summary functions which output mean, median, 95percentCI, Gelman & Rubin diagnostics and the Hellinger distance based diagnostics, Also contains functions to determine when an MCMC chain has converged via Hellinger distance, A function is also provided to compare outputs from identically dimensioned chains for determining sensitivy to prior distribution assumptions

Install the latest version of this package by entering the following in R:

`install.packages("bmk")`

Author | Matthew Krachey and Edward L. Boone |

Date of publication | 2012-10-17 07:29:42 |

Maintainer | Matthew Krachey <matthewkrachey@yahoo.com> |

License | GPL (>= 2) |

Version | 1.0 |

**bmkconverge:** bmkcoverge: Convergence via the Hellinger distance

**bmksensitive:** Hellinger distance between two MCMC chains for sensitivity...

**bmksummary:** Summaries of MCMC chains

**HBconverg1:** Hellinger distance between distributions

**HDistNoSize:** Hellinger distance between two MCMC chains using default grid...

**HDistSize:** Hellinger distance between two MCMC chains using a specified...

**HWconverg1:** Hellinger distance within consecutive batches of MCMC...

**MCMC.one:** MCMC.one is an mcmc object resulting from the following code:

**MCMC.one.mean0:** MCMC.one.mean0 is an mcmc object resulting from the following...

**MCMC.one.mean1:** MCMC.one.mean1 is an mcmc object resulting from the following...

**MCMC.three:** MCMC.three is an mcmc object resulting from the following...

**MCMC.two:** MCMC.two is an mcmc object resulting from the following code:

MD5

DESCRIPTION

NAMESPACE

R

R/HDistSize.R
R/bmksummary.R
R/bmksensitive.R
R/HBconverg1.R
R/bmk.R
R/bmkconverge.R
R/HDistNoSize.R
R/HWconverg1.R
man

man/HWconverg1.Rd
man/bmksummary.Rd
man/HDistSize.Rd
man/MCMC.two.Rd
man/MCMC.one.mean1.Rd
man/HDistNoSize.Rd
man/bmksensitive.Rd
man/MCMC.three.Rd
man/MCMC.one.Rd
man/MCMC.one.mean0.Rd
man/HBconverg1.Rd
man/bmkconverge.Rd
data

data/MCMCsamples.RData

Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.

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