MCMC diagnostic package that contains tools to diagnose convergence as well as to evaluate sensitivity studies, Includes summary functions which output mean, median, 95percentCI, Gelman & Rubin diagnostics and the Hellinger distance based diagnostics, Also contains functions to determine when an MCMC chain has converged via Hellinger distance, A function is also provided to compare outputs from identically dimensioned chains for determining sensitivy to prior distribution assumptions

Author | Matthew Krachey and Edward L. Boone |

Date of publication | 2012-10-17 07:29:42 |

Maintainer | Matthew Krachey <matthewkrachey@yahoo.com> |

License | GPL (>= 2) |

Version | 1.0 |

**bmkconverge:** bmkcoverge: Convergence via the Hellinger distance

**bmksensitive:** Hellinger distance between two MCMC chains for sensitivity...

**bmksummary:** Summaries of MCMC chains

**HBconverg1:** Hellinger distance between distributions

**HDistNoSize:** Hellinger distance between two MCMC chains using default grid...

**HDistSize:** Hellinger distance between two MCMC chains using a specified...

**HWconverg1:** Hellinger distance within consecutive batches of MCMC...

**MCMC.one:** MCMC.one is an mcmc object resulting from the following code:

**MCMC.one.mean0:** MCMC.one.mean0 is an mcmc object resulting from the following...

**MCMC.one.mean1:** MCMC.one.mean1 is an mcmc object resulting from the following...

**MCMC.three:** MCMC.three is an mcmc object resulting from the following...

**MCMC.two:** MCMC.two is an mcmc object resulting from the following code:

bmk

bmk/MD5

bmk/DESCRIPTION

bmk/NAMESPACE

bmk/R

bmk/R/HDistSize.R
bmk/R/bmksummary.R
bmk/R/bmksensitive.R
bmk/R/HBconverg1.R
bmk/R/bmk.R
bmk/R/bmkconverge.R
bmk/R/HDistNoSize.R
bmk/R/HWconverg1.R
bmk/man

bmk/man/HWconverg1.Rd
bmk/man/bmksummary.Rd
bmk/man/HDistSize.Rd
bmk/man/MCMC.two.Rd
bmk/man/MCMC.one.mean1.Rd
bmk/man/HDistNoSize.Rd
bmk/man/bmksensitive.Rd
bmk/man/MCMC.three.Rd
bmk/man/MCMC.one.Rd
bmk/man/MCMC.one.mean0.Rd
bmk/man/HBconverg1.Rd
bmk/man/bmkconverge.Rd
bmk/data

bmk/data/MCMCsamples.RData

Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

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