Description Usage Arguments References Examples
Generate the mean, standard deviation, median, 2.5 percent and 97.5 percent quantiles, Gelman Rubin statistic for convergence, effective samples size and the minimum and maximum Hellinger distances across all chains. outputs summaries for the MCMC samples including the convergence diagnostics of Gelman and Rubin and the Hellinger distance of Boone, Merrick and Krachey.
1 | bmksummary(inputlist)
|
inputlist |
A list of the combined MCMC chains for all samples from one scenario. |
Boone EL, Merrick JR and Krachey MJ. A Hellinger
distance approach to MCMC diagnostics. Journal of
Statistical Computation and Simulation,
DOI:10.1080/00949655.2012.729588
.
1 2 | data(MCMCsamples)
bmksummary(list( MCMC.one, MCMC.two, MCMC.three ))
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