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bnpsd: Simulate Genotypes from the BN-PSD Admixture Model
The Pritchard-Stephens-Donnelly (PSD) admixture model has k intermediate subpopulations from which n individuals draw their alleles dictated by their individual-specific admixture proportions. The BN-PSD model additionally imposes the Balding-Nichols (BN) allele frequency model to the intermediate populations, which therefore evolved independently from a common ancestral population T with subpopulation-specific FST (Wright's fixation index) parameters. The BN-PSD model can be used to yield complex population structures. This simulation approach is now extended to subpopulations related by a tree. Method described in Ochoa and Storey (2021) <doi:10.1371/journal.pgen.1009241>.
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Package details |
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| Author | Alejandro Ochoa [aut, cre] (<https://orcid.org/0000-0003-4928-3403>), John D. Storey [aut] (<https://orcid.org/0000-0001-5992-402X>) |
| Maintainer | Alejandro Ochoa <alejandro.ochoa@duke.edu> |
| License | GPL (>= 3) |
| Version | 1.3.13 |
| URL | https://github.com/StoreyLab/bnpsd/ |
| Package repository | View on CRAN |
| Installation |
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