Man pages for bnpsd
Simulate Genotypes from the BN-PSD Admixture Model

admix_prop_1d_circularConstruct admixture proportion matrix for circular 1D...
admix_prop_1d_linearConstruct admixture proportion matrix for 1D geography
admix_prop_indep_subpopsConstruct admixture proportion matrix for independent...
bnpsdA package for modeling and simulating an admixed population
coanc_admixConstruct the coancestry matrix of an admixture model
coanc_to_kinshipTransform coancestry matrix to kinship matrix
coanc_treeCalculate coancestry matrix corresponding to a tree
draw_all_admixSimulate random allele frequencies and genotypes from the...
draw_genotypes_admixDraw genotypes from the admixture model
draw_p_ancDraw random Uniform or Beta ancestral allele frequencies
draw_p_subpopsDraw allele frequencies for independent subpopulations
draw_p_subpops_treeDraw allele frequencies for subpopulations related by a tree
fit_treeFit a tree structure to a coancestry matrix
fixed_lociIdentify fixed loci
fst_admixCalculate FST for the admixed individuals
make_p_ind_admixConstruct individual-specific allele frequency matrix under...
scale_treeScale a coancestry tree
tree_additiveCalculate additive edges for a coancestry tree, or viceversa
tree_reindex_tipsReindex tree tips in order of appearance in edges
tree_reorderReorder tree tips to best match a desired order
undiff_afUndifferentiate an allele distribution
bnpsd documentation built on Aug. 25, 2021, 5:07 p.m.