boa: Bayesian Output Analysis Program (BOA) for MCMC
Version 1.1.8-2

A menu-driven program and library of functions for carrying out convergence diagnostics and statistical and graphical analysis of Markov chain Monte Carlo sampling output.

AuthorBrian J. Smith [aut, cre]
Date of publication2016-06-23 01:29:05
MaintainerBrian J. Smith <brian-j-smith@uiowa.edu>
LicenseGPL-2
Version1.1.8-2
URL http://www.jstatsoft.org/v21/i11
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("boa")

Popular man pages

boa.acf: Autocorrelation Function
boa.chain.gandr: Gelman and Rubin Convergence Diagnostics
boa.geweke: Geweke Convergence Diagnostics
boa.gewekePwr: Geweke Spectral Density Estimation
boa.hpd: Highest Probability Density Interval
boa.license: Licensing Information
boa.randl: Raftery and Lewis Convergence Diagnostics
See all...

All man pages Function index File listing

Man pages

boa.acf: Autocorrelation Function
boa.batchMeans: Batch Means
boa.chain: Session Lists of MCMC Sequences
boa.chain.add: Add MCMC Sequence
boa.chain.collapse: Concatenate MCMC Sequences
boa.chain.del: Delete MCMC Sequences
boa.chain.eval: Formulate New Parameter
boa.chain.gandr: Gelman and Rubin Convergence Diagnostics
boa.chain.import: Import MCMC Sequence
boa.chain.info: Information about MCMC Sequences
boa.chain.reset: Reset MCMC Sequences
boa.chain.subset: Subset MCMC Sequences
boa.chain.support: Set Support for Parameters
boa.getiter: Extract Iterations
boa.getparms: Extract Parameters
boa.geweke: Geweke Convergence Diagnostics
boa.gewekePwr: Geweke Spectral Density Estimation
boa.handw: Heidelberger and Welch Convergence Diagnostics
boa.hpd: Highest Probability Density Interval
boa.importASCII: Import ASCII Data
boa.importBUGS: Import BUGS Data
boa.importMatrix: Import ASCII Data
boa.init: Start Session
boa.iter: Extract Iteration Numbers
boa.license: Licensing Information
boa.load: Load Session
boa.menu: Interactive BOA Menu
boa.par: Global Parameters
boa.pardesc: Global Parameters Descriptions
boa.plot: Plot Parameters in MCMC Sequences
boa.plot.acf: Plot Autocorrelation Function
boa.plot.bandg: Plot Brooks and Gelman Multivariate Shrink Factors
boa.plot.close: Close Graphics Windows
boa.plot.density: Plot Density Functions
boa.plot.gandr: Plot Gelman and Rubin Shrink Factors
boa.plot.geweke: Plot Geweke Convergence Diagnostics
boa.plot.history: Plot Parameter Estimation Histories
boa.plot.open: Open Graphics Windows
boa.plot.par: Set Plotting Parameters
boa.plot.title: Add Plot Title
boa.plot.trace: Plot Trace Histories
boa.pnames: Extract Parameter Names
boa.print.acf: Print Autocorrelation Functions
boa.print.cor: Print Correlation Matrices
boa.print.gandr: Print Gelman and Rubin Convergence Diagnostics
boa.print.geweke: Print Geweke Convergence Diagnostics
boa.print.handw: Print Heidelberger and Welch Convergence Diagnostics
boa.print.hpd: Print Highest Probability Density Intervals
boa.print.info: Print Information about MCMC Sequences
boa.print.par: Print Global Parameters' Descriptions and Current Values
boa.print.randl: Print Raftery and Lewis Convergence Diagnostics
boa.print.stats: Print Summary Statistics
boa.quit: Quit Session
boa.randl: Raftery and Lewis Convergence Diagnostics
boa.save: Save Session
boa.sortiter: Sort by Iteration Numbers
boa.sortparms: Sort by Parameter Names
boa.stats: Summary Statistics
boa.transform: Transform Variables
boa.version: Version Information
colVars: Column Variances
line: BUGS Line Example

Functions

boa.acf Man page
boa.batchMeans Man page
boa.chain Man page Source code
boa.chain.add Man page
boa.chain.collapse Man page
boa.chain.del Man page
boa.chain.eval Man page
boa.chain.gandr Man page
boa.chain.import Man page
boa.chain.info Man page
boa.chain.reset Man page
boa.chain.subset Man page
boa.chain.support Man page
boa.getinput Source code
boa.getiter Man page
boa.getparms Man page
boa.geweke Man page
boa.gewekePwr Man page
boa.handw Man page
boa.hpd Man page
boa.importASCII Man page
boa.importBUGS Man page
boa.importMatrix Man page
boa.init Man page Source code
boa.iter Man page
boa.license Man page
boa.load Man page Source code
boa.menu Man page
boa.par Man page Source code
boa.pardesc Man page
boa.plot Man page
boa.plot.acf Man page
boa.plot.bandg Man page
boa.plot.close Man page
boa.plot.density Man page
boa.plot.gandr Man page
boa.plot.geweke Man page
boa.plot.history Man page
boa.plot.open Man page
boa.plot.par Man page
boa.plot.title Man page
boa.plot.trace Man page
boa.pnames Man page
boa.print.acf Man page
boa.print.cor Man page
boa.print.gandr Man page
boa.print.geweke Man page
boa.print.handw Man page
boa.print.hpd Man page
boa.print.info Man page
boa.print.par Man page
boa.print.randl Man page
boa.print.stats Man page
boa.quit Man page Source code
boa.randl Man page
boa.save Man page Source code
boa.sortiter Man page
boa.sortparms Man page
boa.stats Man page
boa.transform Man page
boa.version Man page
colVars Man page
do.spectrum0 Source code
line Man page
line1 Man page
line2 Man page
spectrum0 Source code

Files

inst
inst/CITATION
NAMESPACE
data
data/line.rda
R
R/boa.getparms.R
R/boa.license.R
R/boa.importASCII.R
R/boa.menu.analysis.R
R/boa.transform.R
R/boa.plot.title.R
R/boa.chain.del.R
R/colVars.R
R/boa.plot.gandr.R
R/boa.stats.R
R/boa.chain.info.R
R/boa.plot.geweke.R
R/boa.plot.open.R
R/boa.print.randl.R
R/boa.chain.collapse.R
R/boa.menu.plotdesc.R
R/boa.print.stats.R
R/boa.print.info.R
R/boa.chain.subset.R
R/boa.print.acf.R
R/boa.randl.R
R/boa.print.gandr.R
R/boa.version.R
R/boa.plot.par.R
R/boa.print.handw.R
R/boa.chain.import.R
R/boa.plot.close.R
R/boa.gewekePwr.R
R/boa.acf.R
R/boa.importMatrix.R
R/boa.menu.window.R
R/boa.getiter.R
R/boa.plot.acf.R
R/boa.menu.plot.R
R/boa.menu.parms.R
R/boa.menu.data.R
R/boa.plot.R
R/boa.print.geweke.R
R/boa.menu.stats.R
R/boa.chain.add.R
R/boa.chain.eval.R
R/boa.batchMeans.R
R/boa.print.hpd.R
R/boa.menu.import.R
R/boa.hpd.R
R/boa.sortparms.R
R/boa.menu.plotcoda.R
R/boa.chain.gandr.R
R/boa.plot.history.R
R/boa.print.cor.R
R/boa.importBUGS.R
R/boa.menu.file.R
R/boa.plot.bandg.R
R/boa.chain.support.R
R/boa.pardesc.R
R/spectrum0.R
R/boa.geweke.R
R/boa.handw.R
R/boa.sortiter.R
R/boa.getinput.R
R/boa.chain.reset.R
R/boa.print.par.R
R/boa.plot.density.R
R/boa.menu.par.R
R/boa.core.R
R/boa.menu.R
R/boa.menu.coda.R
R/boa.pnames.R
R/boa.plot.trace.R
R/boa.menu.chains.R
R/boa.menu.setpar.R
R/boa.iter.R
MD5
DESCRIPTION
man
man/boa.license.Rd
man/boa.par.Rd
man/boa.plot.close.Rd
man/boa.print.cor.Rd
man/boa.plot.density.Rd
man/boa.print.handw.Rd
man/boa.gewekePwr.Rd
man/boa.sortiter.Rd
man/boa.chain.support.Rd
man/boa.plot.title.Rd
man/boa.plot.Rd
man/boa.print.gandr.Rd
man/boa.plot.trace.Rd
man/boa.print.geweke.Rd
man/boa.chain.eval.Rd
man/boa.plot.par.Rd
man/boa.sortparms.Rd
man/boa.plot.gandr.Rd
man/boa.chain.subset.Rd
man/boa.acf.Rd
man/boa.importASCII.Rd
man/boa.plot.open.Rd
man/boa.getparms.Rd
man/boa.geweke.Rd
man/boa.init.Rd
man/boa.plot.geweke.Rd
man/boa.chain.collapse.Rd
man/boa.quit.Rd
man/boa.hpd.Rd
man/boa.version.Rd
man/boa.chain.del.Rd
man/boa.chain.import.Rd
man/boa.print.info.Rd
man/boa.batchMeans.Rd
man/boa.iter.Rd
man/line.Rd
man/boa.getiter.Rd
man/boa.plot.acf.Rd
man/boa.importMatrix.Rd
man/boa.plot.history.Rd
man/boa.save.Rd
man/boa.print.hpd.Rd
man/boa.transform.Rd
man/boa.chain.Rd
man/boa.stats.Rd
man/boa.load.Rd
man/colVars.Rd
man/boa.print.acf.Rd
man/boa.pardesc.Rd
man/boa.chain.reset.Rd
man/boa.chain.add.Rd
man/boa.print.par.Rd
man/boa.print.stats.Rd
man/boa.menu.Rd
man/boa.plot.bandg.Rd
man/boa.chain.info.Rd
man/boa.importBUGS.Rd
man/boa.randl.Rd
man/boa.pnames.Rd
man/boa.chain.gandr.Rd
man/boa.handw.Rd
man/boa.print.randl.Rd
boa documentation built on May 19, 2017, 9:36 a.m.

Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

Please suggest features or report bugs in the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.