boa.plot.geweke: Plot Geweke Convergence Diagnostics
In boa: Bayesian Output Analysis Program (BOA) for MCMC

Description Usage Arguments Value Author(s) See Also

Creates a single plot of the Geweke convergence diagnostics within different line segments for a parameter in an MCMC sequence.

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boa.plot.geweke(lname, pname, bins = boa.par("geweke.bins"),
                p.first = boa.par("geweke.first"), p.last = boa.par("geweke.last"),
                alpha = boa.par("alpha"), annotate = boa.par("legend"))

`lname`	Character string giving the name of the desired MCMC sequence in the working session list of sequences.
`pname`	Character string giving the name of the parameter to be plotted.
`bins`	Number of line segments within the MCMC sequence at which to plot the Geweke convergence diagnostics. The ith line segment contains the last ((bins - i + 1) / bins)*100 bins. This may lead to segments in which there are too few iterations to compute the convergence diagnostics. Such segments, if they exist, are automatically omitted from the calculations.
`p.first`	Proportion of iterations to include in the first window.
`p.last`	Proportion of iterations to include in the last window.
`alpha`	Alpha level for the rejection region lines drawn on the graph.
`annotate`	Logical value indicating that a legend be included in the plot.