pFinalSizeAndGenSwitch1: Joint probability of outbreak final size and number of...

In branchingprocess: Calculate Outbreak Probabilities for a Branching Process Model

Joint probability of outbreak final size and number of transmission generations with offspring distribution parameters switched after generation one

Description

Joint probability of outbreak final size and number of transmission generations with offspring distribution parameters switched after generation one

Usage

pFinalSizeAndGenSwitch1(g, n, j, R0, k0, Rc, kc)

Arguments

g	Number of generations
n	Number of initial cases
j	Final size
R0	Mean of negative binomial offspring distribution from generation one
k0	Dispersion of negative binomial offspring distribution from generation one
Rc	Mean of negative binomial offspring distribution from generation two on
kc	Dispersion of negative binomial offspring distribution from generation two on

Value

The joint probability of outbreak final size and number of transmission generations

Author(s)

Damon Toth

Examples

# Probability that 1 initial infection leads to an outbreak of final size 20 over exactly
# 3 generations of transmission:
pFinalSizeAndGenSwitch1(g=3,n=1,j=20,R0=2,k0=0.1,Rc=0.5,kc=1)

branchingprocess documentation built on June 8, 2025, 11:35 a.m.