pGenSwitch1: Probability that one initial case leads to an outbreak...

In branchingprocess: Calculate Outbreak Probabilities for a Branching Process Model

Probability that one initial case leads to an outbreak lasting less than g generations of transmission, with offspring distribution parameters switched after generation one.

Description

Probability that one initial case leads to an outbreak lasting less than g generations of transmission, with offspring distribution parameters switched after generation one.

Usage

pGenSwitch1(gMax, R0, k0, Rc, kc)

Arguments

gMax	Maximum number of generations
R0	Basic reproduction number: mean of negative binomial offspring distribution from generation one
k0	Dispersion of negative binomial offspring distribution from generation one
Rc	Control reproduction number: mean of negative binomial offspring distribution from generation two plus
kc	Dispersion of negative binomial offspring distribution from generation two plus

Value

A vector of probabilities for each number of generations from 1 to gmax

Author(s)

Damon Toth

Examples

# Probability of outbreak lasting less than 1,2,3,...,10 generations:
pGenSwitch1(gMax=10, R0=3, k0=0.1, Rc=0.5, kc=1)

branchingprocess documentation built on June 8, 2025, 11:35 a.m.