ch1.GM03563: Fibroblast cell line (GM03563) data

In breakpoint: An R Package for Multiple Break-Point Detection via the Cross-Entropy Method

Description

Chromosome 1 of cell line GM03563

Usage

data("ch1.GM03563")

Format

A single column data frame with 135 observations corresponds to chromosome 1 of cell line GM03563.

log2ratio

normalized average of the log base 2 test over reference ratio data

Details

This data set is extracted from a single experiments on 15 fibroblast cell lines with each array containing over 2000 (mapped) BACs spotted in triplicate discussed in Snijders et al.(2001). Data corresponds to the chromosome 1 of cell line GM03563.

References

Snijders,A.M. et al. (2001) Assembly of microarrays for genome-wide measurement of DNA copy number. Nature Genetics, 29, 263-26.

Examples

data(ch1.GM03563)
## Not run: 
## CE with four parameter beta distribution ##
obj1 <- CE.Normal.Mean(ch1.GM03563, distyp = 1, parallel =TRUE)
profilePlot(obj1, ch1.GM03563)

## CE with truncated normal distribution ##
obj2 <- CE.Normal.Mean(ch1.GM03563, distyp = 2, parallel =TRUE)
profilePlot(obj2, ch1.GM03563)

## End(Not run)

breakpoint documentation built on May 1, 2019, 8:14 p.m.