broman: Karl Broman's R Code
Version 0.65-4

Miscellaneous R functions, including functions related to graphics (mostly for base graphics), permutation tests, running mean/median, and general utilities.

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AuthorKarl W Broman <kbroman@biostat.wisc.edu>, with contributions from Aimee Teo Broman
Date of publication2017-05-28 19:08:03 UTC
MaintainerKarl W Broman <kbroman@biostat.wisc.edu>
LicenseGPL-3
Version0.65-4
URL https://github.com/kbroman/broman
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("broman")

Man pages

add_commas: Add commas to a large number
arrowlocator: Use the locator function to plot an arrow
attrnames: Get names of attributes
brocolors: Vectors of colors for figures
bromanversion: Installed version of R/broman
cf: Compare objects, including missing data pattern
chisq: Chi-square test by simulation for a two-way table
colwalpha: Convert a color to use alpha transparency
compare_rows: Compare rows in a matrix
convert2hex: Convert decimal to hex
crayons: Crayon colors
done: Send a short message via RPushbullet.
dotplot: Dot chart with a gray background
errors2pushbullet: Send further errors to pushbullet
excel_fig: Excel-style figure displaying contents of a matrix
exit: exit R without saving
fac2num: Convert a factor to numeric
fisher: Fisher's exact test for a two-way table
grayplot: Plot with a gray background
h: View html version of help file
hex2dec: Convert from hex to decimal
histlines: Utility to create line-based histogram
jiggle: Jiggle points horizontally
kbdate: My little date facility
lenuniq: Number of unique values
make: Run make within a package directory
manyboxplot: Boxplot-like figure for many groups
maxabs: maximum of absolute value
mypairs: My scatterplot matrix
myround: Round a number, preserving extra 0's
normalize: Quantile normalization
note: Send a note to pushbullet
numbers: Numbers spelled out in English
objectsizes: Calculate sizes of all objects in workspace
openfile: Open a file
paired.perm.test: Paired permutation t-test
paste.: paste with dot separator
paste00: paste with null or dot as separator and with collapse
perm.test: Permutation t-test
plot_crayons: Illustration of crayon colors
pushbullet_devices: Grab info on Pushbullet devices.
qqline2: qqline for qqplot
qr2: The QR decomposition of a matrix
quantileSE: Sample quantiles and their standard errors
revrainbow: Create vector of colors from blue to red
rmvn: Simulate multivariate normal
runningmean: Running mean, sum, or median
runningratio: Running ratio
setRNGparallel: Set up random number generation for parallel calculations
simp: Numerical integration
stop_sending_errors: Stop sending errors to pushbullet
strwidth2lines: Calculate width of a character string in number of lines
strwidth2xlim: Calculate horizontal limit in user coordinates for adding...
switchv: Vectorized version of switch
theme_karl: Karl's ggplot2 theme
triarrow: Plot an arrow within a Holmans triangle
trilines: Plot lines within a Holmans triangle
triplot: Plot Holmans triangle
tripoints: Plot points within a Holmans triangle
venn: Plot to-scale Venn diagram
winsorize: Winsorize a vector
xlimlabel: Calulate horizontal limit in user coordinates for adding...

Functions

Numbers Man page Man page
add_commas Man page Source code
arrowlocator Man page Source code
attrnames Man page Source code
binary.v Source code
brocolors Man page Source code
bromanversion Man page Source code
cf Man page Source code
cf.default Man page Source code
cf.list Man page Source code
chisq Man page Source code
colwalpha Man page Source code
compare_rows Man page Source code
convert2hex Man page Source code
crayons Man page Source code
dec2hex Man page
done Man page Source code
dotplot Man page Source code
errors2pushbullet Man page Source code
excel_fig Man page Source code
excel_fig_direct Source code
exit Man page Source code
fac2num Man page Source code
fisher Man page Source code
grayplot Man page Source code
h Man page Source code
hex2dec Man page Source code
histlines Man page Source code
is_pushbullet_loaded Source code
jiggle Man page Source code
karl_theme Man page
kbdate Man page Source code
lenuniq Man page Source code
load_pushbullet Source code
make Man page Source code
manyboxplot Man page Source code
maxabs Man page Source code
mypairs Man page Source code
myround Man page Source code
normalize Man page Source code
note Man page Source code
numbers Man page
objectsizes Man page Source code
openfile Man page Source code
paired.perm.test Man page Source code
paste. Man page Source code
paste.. Man page Source code
paste.0 Man page Source code
paste0. Man page Source code
paste00 Man page Source code
perm.test Man page Source code
plot_crayons Man page Source code
pushbullet_devices Man page Source code
qqline2 Man page Source code
qr2 Man page Source code
quantileSE Man page Source code
revrainbow Man page Source code
rmvn Man page Source code
runningmean Man page Source code
runningratio Man page Source code
setRNGparallel Man page Source code
simp Man page Source code
stop_sending_errors Man page Source code
strwidth2lines Man page Source code
strwidth2xlim Man page Source code
subtrap Source code
svg_cat Source code
svg_end Source code
svg_rect Source code
svg_start Source code
svg_text Source code
switchv Man page Source code
theme_karl Man page Source code
trap Man page Source code
triarrow Man page Source code
trilines Man page Source code
triplot Man page Source code
tripoints Man page Source code
unsetRNGparallel Man page Source code
venn Man page Source code
winsorize Man page Source code
xlimlabel Man page Source code

Files

inst
inst/STATUS.txt
inst/LICENSE.txt
inst/README.md
tests
tests/testthat.R
tests/testthat
tests/testthat/test-switchv.R
tests/testthat/test-hex2dec.R
tests/testthat/test-runningmean.R
tests/testthat/test-fac2num.R
tests/testthat/test-maxabs.R
tests/testthat/test-crayons.R
tests/testthat/test-add_commas.R
tests/testthat/test-winsorize.R
tests/testthat/test-kbdate.R
tests/testthat/test-lenuniq.R
tests/testthat/test-myround.R
tests/testthat/test-compare_rows.R
src
src/R_init.h
src/compare_rows.h
src/normalize.h
src/R_init.c
src/runningmean.c
src/count_close.c
src/runningmean.h
src/count_close.h
src/compare_rows.c
src/normalize.c
NAMESPACE
data
data/numbers.RData
data/numbers-cap.RData
R
R/qr.R
R/brocolors.R
R/histlines.R
R/qqline2.R
R/fisher.R
R/revrainbow.R
R/add_commas.R
R/myround.R
R/pushbullet.R
R/numbers.R
R/excel_fig.R
R/openfile.R
R/jiggle.R
R/fac2num.R
R/objectsizes.R
R/setRNGparallel.R
R/exit.R
R/theme_karl.R
R/kbdate.R
R/colwalpha.R
R/holmans_triangle.R
R/runningmean.R
R/strwidth2lines.R
R/simp.R
R/rmvn.R
R/switchv.R
R/maxabs.R
R/permtest.R
R/make.R
R/pastedot.R
R/compare_rows.R
R/grayplot.R
R/help.R
R/xlimlabel.R
R/manyboxplot.R
R/convert2hex.R
R/util.R
R/attrnames.R
R/normalize.R
R/cf.R
R/dotplot.R
R/strwidth2xlim.R
R/winsorize.R
R/arrowlocator.R
R/quantileSE.R
R/venn_diagram.R
R/lenuniq.R
R/zzz.R
R/mypairs.R
MD5
DESCRIPTION
man
man/perm.test.Rd
man/mypairs.Rd
man/plot_crayons.Rd
man/compare_rows.Rd
man/qqline2.Rd
man/brocolors.Rd
man/theme_karl.Rd
man/exit.Rd
man/myround.Rd
man/winsorize.Rd
man/h.Rd
man/triarrow.Rd
man/attrnames.Rd
man/dotplot.Rd
man/revrainbow.Rd
man/crayons.Rd
man/paste..Rd
man/stop_sending_errors.Rd
man/fac2num.Rd
man/switchv.Rd
man/tripoints.Rd
man/quantileSE.Rd
man/colwalpha.Rd
man/pushbullet_devices.Rd
man/openfile.Rd
man/runningmean.Rd
man/objectsizes.Rd
man/fisher.Rd
man/hex2dec.Rd
man/grayplot.Rd
man/simp.Rd
man/manyboxplot.Rd
man/runningratio.Rd
man/paired.perm.test.Rd
man/histlines.Rd
man/strwidth2xlim.Rd
man/qr2.Rd
man/make.Rd
man/strwidth2lines.Rd
man/jiggle.Rd
man/arrowlocator.Rd
man/done.Rd
man/numbers.Rd
man/xlimlabel.Rd
man/chisq.Rd
man/setRNGparallel.Rd
man/triplot.Rd
man/cf.Rd
man/paste00.Rd
man/convert2hex.Rd
man/normalize.Rd
man/errors2pushbullet.Rd
man/kbdate.Rd
man/maxabs.Rd
man/add_commas.Rd
man/lenuniq.Rd
man/trilines.Rd
man/venn.Rd
man/excel_fig.Rd
man/rmvn.Rd
man/bromanversion.Rd
man/note.Rd
broman documentation built on May 29, 2017, 11:14 a.m.