caRpools: CRISPR AnalyzeR for Pooled CRISPR Screens

CRISPR-Analyzer for pooled CRISPR screens (caRpools) provides an end-to-end analysis of CRISPR screens including quality control, hit candidate analysis, visualization and automated report generation using R markdown. Needs MAGeCK (, bowtie2 for all functions. CRISPR (clustered regularly interspaced short palindromic repeats) is a method to perform genome editing. See <> for more information on CRISPR.

Package details

AuthorJan Winter, Florian Heigwer
MaintainerJan Winter <>
Package repositoryView on CRAN
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caRpools documentation built on May 2, 2019, 11:26 a.m.