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caRpools: CRISPR AnalyzeR for Pooled CRISPR Screens
CRISPR-Analyzer for pooled CRISPR screens (caRpools) provides an end-to-end analysis of CRISPR screens including quality control, hit candidate analysis, visualization and automated report generation using R markdown. Needs MAGeCK (http://sourceforge.net/p/mageck/wiki/Home/), bowtie2 for all functions. CRISPR (clustered regularly interspaced short palindromic repeats) is a method to perform genome editing. See <https://en.wikipedia.org/wiki/CRISPR> for more information on CRISPR.
Getting started
Browse package contents
Package details |
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| Author | Jan Winter, Florian Heigwer |
| Maintainer | Jan Winter <jan.winter@dkfz-heidelberg.de> |
| License | GPL |
| Version | 0.83 |
| URL | http://www.crispr-analyzer.de https://github.com/boutroslab/caRpools |
| Package repository | View on CRAN |
| Installation |
Install the latest version of this package by entering the following in R:
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