load.file: Load sgRNA NGS Data especially for caRpools

In caRpools: CRISPR AnalyzeR for Pooled CRISPR Screens

Description

This function is a parser of read.table to load sgRNA NGS data into a data.frame

Usage

load.file(filename, header = TRUE, sep = "\t", comment.char="", type=NULL)

Arguments

filename	The filename of the NGS dataset file.
header	Specifies whether a header is present in the file or not.
sep	Specifies how data is separated column-wise. See ?read.table for further information.
comment.char	comment.char see ?read.table
type	Type of data being loaded. Bu default NULL, which loads tabular data. Other values: xlsx for MIACCS file and fastalib to read the library reference fasta file

Details

See ?read.table for further information.

Value

load.file returns a data.frame.

Note

none

Author(s)

Jan Winter

Examples

data(caRpools)
#data.frame = load.file("sgRNA.txt", header= TRUE, sep="\t")

caRpools documentation built on May 2, 2019, 11:26 a.m.