Files in caRpools
CRISPR AnalyzeR for Pooled CRISPR Screens

inst
inst/doc
inst/doc/CaRpools.R inst/doc/CaRpools.Rmd
inst/doc/CaRpools.html
NAMESPACE
data
data/caRpools.RData
R
R/load.packages.R R/aggregatetogenes.R R/venn.diagram.crispr.R R/carpools.raw.genes.R R/get.gene.info.R R/check.caRpools.R R/carpools.waterfall.pval.R R/final.table.R R/carpools.hitident.R R/stat.mageck.R R/carpools.read.count.vs.R R/use.caRpools.R R/carpools.read.count.vs_OLD.R R/compare.analysis.R R/carpools.read.ballmap.R R/stat.wilcox.R R/stats.data.R R/carpools.read.depth.R R/carpools.vioplot.R R/carpools.read.distribution.R R/carpools.hit.sgrna.R R/unmapped.genes.R R/carpools.sgrna.table.R R/carpools.hit.scatter.R R/data.extract.R R/sgRNAs.compare.R R/gene.remove.R R/carpools.hit.overview.R R/carpools.reads.genedesigns.R R/generate.hits.R R/stat.DESeq.R R/load.file.R
vignettes
vignettes/pictures
vignettes/pictures/start-symbol.png
vignettes/pictures/rstudio-knit.png
vignettes/pictures/fastq-format.png
vignettes/pictures/workflow.png
vignettes/pictures/rstudio.png
vignettes/pictures/extract.png
vignettes/pictures/extraction.png
vignettes/pictures/ova-file.png
vignettes/pictures/start-button.png
vignettes/pictures/login.png
vignettes/pictures/miaccs-fastq.png
vignettes/pictures/CaRpools.png
vignettes/pictures/configure-appliance.png
vignettes/pictures/folder-sctructure-before.png
vignettes/pictures/readcount.png
vignettes/pictures/port-forward.png
vignettes/pictures/alignment-match.png
vignettes/pictures/folder-structure-before.png
vignettes/pictures/folder-structure-FASTQ-before.png
vignettes/pictures/folder-structure-FINAL.png
vignettes/pictures/download.png
vignettes/pictures/terminal.png
vignettes/pictures/import-progress.png
vignettes/pictures/miaccs-readcount.png
vignettes/pictures/library-fasta.png
vignettes/pictures/fastq-format-example.png
vignettes/pictures/MIACCS1.png
vignettes/pictures/miaccs-analysis.png
vignettes/pictures/folder-structure-FASTQ-FINAL.png
vignettes/CaRpools.Rmd
MD5
build
build/vignette.rds
DESCRIPTION
man
man/get.gene.info.Rd man/data.extract.Rd man/check.caRpools.Rd man/TREAT2.Rd man/CONTROL1.Rd man/aggregatetogenes.Rd man/CONTROL1.g.Rd man/d.TREAT2.Rd man/stat.wilcox.Rd man/caRpools.Rd man/carpools.reads.genedesigns.Rd man/use.caRpools.Rd man/stat.mageck.Rd man/stats.data.Rd man/d.TREAT1.Rd man/compare.analysis.Rd man/libFILE.Rd man/TREAT1.Rd man/carpools.hit.sgrna.Rd man/carpools.hit.overview.Rd man/d.CONTROL1.Rd man/carpools.read.distribution.Rd man/CONTROL2.g.Rd man/carpools.waterfall.pval.Rd man/load.packages.Rd man/unmapped.genes.Rd man/carpools.read.depth.Rd man/carpools.sgrna.table.Rd man/load.file.Rd man/TREAT1.g.Rd man/generate.hits.Rd man/d.CONTROL2.Rd man/referencefile.Rd man/carpools.read.count.vs.Rd man/gene.remove.Rd man/final.table.Rd man/stat.DESeq.Rd man/carpools.hitident.Rd man/carpools.hit.scatter.Rd man/TREAT2.g.Rd man/CONTROL2.Rd man/carpools.raw.genes.Rd
caRpools documentation built on May 30, 2017, 2:52 a.m.