Files in caRpools
CRISPR AnalyzeR for Pooled CRISPR Screens
MD5
DESCRIPTION
NAMESPACE
inst/doc/CaRpools.R
inst/doc/CaRpools.Rmd
inst/doc/CaRpools.html
vignettes/CaRpools.Rmd
vignettes/pictures/workflow.png
vignettes/pictures/fastq-format.png
vignettes/pictures/CaRpools.png
vignettes/pictures/miaccs-readcount.png
vignettes/pictures/start-button.png
vignettes/pictures/start-symbol.png
vignettes/pictures/folder-sctructure-before.png
vignettes/pictures/extraction.png
vignettes/pictures/miaccs-analysis.png
vignettes/pictures/library-fasta.png
vignettes/pictures/terminal.png
vignettes/pictures/folder-structure-FASTQ-before.png
vignettes/pictures/extract.png
vignettes/pictures/folder-structure-FASTQ-FINAL.png
vignettes/pictures/login.png
vignettes/pictures/rstudio.png
vignettes/pictures/ova-file.png
vignettes/pictures/port-forward.png
vignettes/pictures/fastq-format-example.png
vignettes/pictures/alignment-match.png
vignettes/pictures/import-progress.png
vignettes/pictures/readcount.png
vignettes/pictures/configure-appliance.png
vignettes/pictures/download.png
vignettes/pictures/folder-structure-before.png
vignettes/pictures/folder-structure-FINAL.png
vignettes/pictures/rstudio-knit.png
vignettes/pictures/MIACCS1.png
vignettes/pictures/miaccs-fastq.png
R/sgRNAs.compare.R
R/stats.data.R
R/stat.wilcox.R
R/generate.hits.R
R/carpools.hitident.R
R/carpools.hit.overview.R
R/carpools.read.count.vs.R
R/carpools.read.count.vs_OLD.R
R/load.file.R
R/unmapped.genes.R
R/use.caRpools.R
R/stat.mageck.R
R/gene.remove.R
R/carpools.waterfall.pval.R
R/stat.DESeq.R
R/carpools.vioplot.R
R/get.gene.info.R
R/carpools.reads.genedesigns.R
R/carpools.read.depth.R
R/carpools.read.distribution.R
R/final.table.R
R/load.packages.R
R/data.extract.R
R/compare.analysis.R
R/aggregatetogenes.R
R/venn.diagram.crispr.R
R/carpools.hit.scatter.R
R/carpools.hit.sgrna.R
R/carpools.raw.genes.R
R/carpools.sgrna.table.R
R/carpools.read.ballmap.R
R/check.caRpools.R
man/CONTROL1.g.Rd
man/use.caRpools.Rd
man/d.TREAT1.Rd
man/gene.remove.Rd
man/d.CONTROL1.Rd
man/carpools.reads.genedesigns.Rd
man/CONTROL2.Rd
man/stats.data.Rd
man/carpools.waterfall.pval.Rd
man/carpools.hit.overview.Rd
man/get.gene.info.Rd
man/compare.analysis.Rd
man/carpools.read.depth.Rd
man/generate.hits.Rd
man/carpools.hit.sgrna.Rd
man/carpools.read.count.vs.Rd
man/caRpools.Rd
man/aggregatetogenes.Rd
man/data.extract.Rd
man/CONTROL1.Rd
man/CONTROL2.g.Rd
man/stat.DESeq.Rd
man/referencefile.Rd
man/final.table.Rd
man/carpools.hitident.Rd
man/libFILE.Rd
man/carpools.raw.genes.Rd
man/stat.wilcox.Rd
man/TREAT2.g.Rd
man/load.packages.Rd
man/TREAT1.g.Rd
man/carpools.hit.scatter.Rd
man/TREAT2.Rd
man/d.TREAT2.Rd
man/check.caRpools.Rd
man/stat.mageck.Rd
man/carpools.read.distribution.Rd
man/d.CONTROL2.Rd
man/load.file.Rd
man/unmapped.genes.Rd
man/TREAT1.Rd
man/carpools.sgrna.table.Rd
build/vignette.rds
data/caRpools.RData
