cancerGI: Analyses of Cancer Gene Interaction

Functions to perform the following analyses: i) inferring epistasis from RNAi double knockdown data; ii) identifying gene pairs of multiple mutation patterns; iii) assessing association between gene pairs and survival; and iv) calculating the smallworldness of a graph (e.g., a gene interaction network). Data and analyses are described in Wang, X., Fu, A. Q., McNerney, M. and White, K. P. (2014). Widespread genetic epistasis among breast cancer genes. Nature Communications. 5 4828. <doi:10.1038/ncomms5828>.

Install the latest version of this package by entering the following in R:
install.packages("cancerGI")
AuthorAudrey Qiuyan Fu and Xiaoyue Wang
Date of publication2016-04-01 16:42:25
MaintainerAudrey Q. Fu <audreyqyfu@gmail.com>
LicenseGPL (>= 2)
Version1.0.0

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