Functions to perform the following analyses: i) inferring epistasis from RNAi double knockdown data; ii) identifying gene pairs of multiple mutation patterns; iii) assessing association between gene pairs and survival; and iv) calculating the smallworldness of a graph (e.g., a gene interaction network). Data and analyses are described in Wang, X., Fu, A. Q., McNerney, M. and White, K. P. (2014). Widespread genetic epistasis among breast cancer genes. Nature Communications. 5 4828. <doi:10.1038/ncomms5828>.
|Author||Audrey Qiuyan Fu and Xiaoyue Wang|
|Maintainer||Audrey Q. Fu <[email protected]>|
|License||GPL (>= 2)|
|Package repository||View on CRAN|
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