processDataMutSurv | R Documentation |
This functions finds matched individuals in data.mut
and data.surv
, and outputs the two data sets with only matched individuals.
processDataMutSurv(data.mut, data.surv, colTime = 2, colStatus = 3)
data.mut |
Integer matrix of genes by cases. The first column contains gene names. Each of the other columns contains mutation patterns of a case: 0 as wildtype, 1 amplification and -1 deletion. |
data.surv |
Data frame containing case ID, survival time and survival status. Cases do not need to match those in |
colTime |
Scalar indicating which column in |
colStatus |
A character string indicating which column in |
A list of two data frames, data.mut
and data.surv
. Format of the data frames is the same as input, except that the individuals in the two data frames are matched.
Audrey Q. Fu, Xiaoyue Wang
Wang, X., Fu, A. Q., McNerney, M. and White, K. P. (2014). Widespread genetic epistasis among breast cancer genes. Nature Communications. 5 4828. doi: 10.1038/ncomms5828
computeSurvivalPValueForGenePairSet.output
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.