computeSmallWorldness | Compute smallworldness of a graph |
computeSurvivalPValueForGenePairSet.output | Survival analysis for pairs of genes |
computeSurvivalPValueGenePairAll.output | Survival analysis for pairs of genes (with matched... |
computeSurvivalPValueOneGenePair | Survival analysis for one pair of genes |
computeSurvivalPValueOneGenePair.output | Write results from survival analysis to output for one pair... |
constructDesignMatrix | Generate a design matrix from raw RNAi data. |
mutations | Genetic mutation data in patients. |
processDataMutSurv | Find matched individuals in mutation and survival data |
RNAi | Molecular phenotypes from single and double knockdowns in... |
survival | Patient survival data. |
tested_pairs | Gene pairs tested in the double knockdown assay. |
testMutationalPatternAll.wrapper | Compute the p and q values of all pairwise gene mutation... |
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