Man pages for cancerGI
Analyses of Cancer Gene Interaction
| computeSmallWorldness | Compute smallworldness of a graph |
| computeSurvivalPValueForGenePairSet.output | Survival analysis for pairs of genes |
| computeSurvivalPValueGenePairAll.output | Survival analysis for pairs of genes (with matched... |
| computeSurvivalPValueOneGenePair | Survival analysis for one pair of genes |
| computeSurvivalPValueOneGenePair.output | Write results from survival analysis to output for one pair... |
| constructDesignMatrix | Generate a design matrix from raw RNAi data. |
| mutations | Genetic mutation data in patients. |
| processDataMutSurv | Find matched individuals in mutation and survival data |
| RNAi | Molecular phenotypes from single and double knockdowns in... |
| survival | Patient survival data. |
| tested_pairs | Gene pairs tested in the double knockdown assay. |
| testMutationalPatternAll.wrapper | Compute the p and q values of all pairwise gene mutation... |
