cancerTiming: Estimation of Temporal Ordering of Cancer Abnormalities

Timing copy number changes using estimates of mutational allele frequency from resequencing of tumor samples.

AuthorElizabeth Purdom
Date of publication2016-04-03 00:22:46
MaintainerElizabeth Purdom <epurdom@stat.berkeley.edu>
LicenseGPL (>= 2)
Version3.1.8

View on CRAN

Functions

allAF Man page
bootstrapEventTiming Man page
contAF Man page
decontAF Man page
divideGenome Man page
errorAF Man page
eventTiming Man page
eventTimingOverList Man page
getPi0Summary Man page
hg19chromosomes Man page
labelSeg Man page
makeEventHistory Man page
mleAF Man page
multidensity Man page
mut2Seg Man page
mutData Man page
numChromosome Man page
plotAlleleByPosition Man page
plotAlleleDensity Man page
plotCopies Man page
plotPi0 Man page
plotSegmentation Man page
plotSeqCount Man page
readSimulation Man page

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