Description Usage Arguments Details Value Author(s) See Also Examples
A function to match mutations into the segments that include them.
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mutData |
matrix or data.frame. Column names must include ‘chr’ and ‘position’ |
segData |
matrix or data.frame. Column names must include ‘chr’,‘start’,and ‘end’ (in any order) |
verbose |
logical. If TRUE gives information about the progress and possible problems (e.g. if different chromosome names in the two sets ) |
This function finds which segments in the segData file contain the mutations and returns a data.frame with the concatenation of the mutation information and the segments information. The function relies on findOverlaps in the GenomicRanges package in bioconductor.
Data frame with concatenated values.
Elizabeth Purdom
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