Description Usage Arguments Author(s)
Basic function for plotting the ratio of tumor to normal coverage, and calculating the average over segments. A simple tool for assessing copy number breaks.
1 2 | plotSeqCount(position, t_count, n_count, ylim=NULL, normFac=1,
segs, segColors = palette(), ...)
|
position |
vector of position of the base |
t_count |
vector of number of reads overlapping position in tumor |
n_count |
vector of number of reads overlapping position in normal |
ylim |
set the limits of y axis. If NULL, default values found. |
normFac |
a normalizing factor to correct for |
segs |
factor as same length as position, identifying which segment a count is from |
segColors |
|
... |
passed to plot |
Elizabeth Purdom
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