Man pages for celltrackR
Motion Trajectory Analysis
| aggregate.tracks | Compute Summary Statistics of Subtracks |
| analyzeCellPairs | Find Distances and Angles for all Pairs of Tracks |
| analyzeStepPairs | Find Distances and Angles for all Pairs of Steps |
| AngleAnalysis | Angle Analysis |
| angleCells | Angle between Two Tracks |
| angleSteps | Angle between Two Steps |
| angleToDir | Angle with a Reference Direction |
| angleToPlane | Angle with a Reference Plane |
| angleToPoint | Angle with a Reference Point |
| applyStaggered | Compute a Measure on a Track in a Staggered Fashion |
| as.data.frame.tracks | Convert Tracks to Data Frame |
| as.list.tracks | Convert from Tracks to List |
| as.tracks.data.frame | Convert from Data Frame to Tracks |
| BCells | Two-Photon Data: B Cells in a Lymph Node |
| beaucheminTrack | Simulate a 3D Cell Track Using the Beauchemin Model |
| bootstrapTrack | Simulate Tracks via Bootstrapping of Speed and Turning Angle... |
| boundingBox | Bounding Box of a Tracks Object |
| brownianTrack | Simulate an Uncorrelated Random Walk |
| cellPairs | Find Pairs of Tracks |
| celltrackR | celltrackR: Quantitative analysis of motion. |
| cheatsheet | Open the package cheat sheet |
| clusterTracks | Cluster Tracks |
| distanceCells | Minimum Distance between Two Cells |
| distanceSteps | Distance between Two Steps |
| distanceToPlane | Distance to a Reference Plane |
| distanceToPoint | Distance to a Reference Point |
| filterTracks | Filter Tracks |
| getFeatureMatrix | Obtaining A Feature Matrix |
| hotellingsTest | Test Unbiasedness of Motion |
| interpolateTrack | Interpolate Track Positions |
| maxTrackLength | Length of Longest Track |
| Neutrophils | Two-Photon Data: Neutrophils in an Infected Lung |
| normalizeToDuration | Normalize a Measure to Track Duration |
| normalizeTracks | Normalize Tracks |
| pairsByTime | Distance between pairs of tracks at every timepoint |
| plot3d | Plot Tracks in 3D |
| plotTrackMeasures | Bivariate Scatterplot of Track Measures |
| plot.tracks | Plot Tracks in 2D |
| prefixes | Get Track Prefixes |
| projectDimensions | Extract Spatial Dimensions |
| read.tracks.csv | Read Tracks from Text File |
| repairGaps | Process Tracks Containing Gaps |
| selectSteps | Get Single Steps Starting at a Specific Time from a Subset of... |
| selectTracks | Select Tracks by Measure Values |
| simulateTracks | Generate Tracks by Simulation |
| sort.tracks | Sort Track Positions by Time |
| splitTrack | Split Track into Multiple Tracks |
| staggered | Staggered Version of a Function |
| stepPairs | Find Pairs of Steps Occurring at the Same Time |
| subsample | Subsample Track by Constant Factor |
| subtracks | Decompose Track(s) into Subtracks |
| subtracksByTime | Extract Subtracks Starting at a Specific Time |
| TCells | Two-Photon Data: T Cells in a Lymph Node |
| timePoints | Find All Unique Time Points in a Track Dataset |
| timeStep | Compute Time Step of Tracks |
| trackFeatureMap | Dimensionality Reduction on Track Features |
| TrackMeasures | Track Measures |
| tracks | Tracks Objects |
| vecAngle | Angle Between Two Vectors |
| wrapTrack | Create Track Object from Single Track |
