cgdsr: R-Based API for Accessing the MSKCC Cancer Genomics Data Server (CGDS)

Provides a basic set of R functions for querying the Cancer Genomics Data Server (CGDS), hosted by the Computational Biology Center at Memorial-Sloan-Kettering Cancer Center (MSKCC).

AuthorAnders Jacobsen <jacobsen@cbio.mskcc.org>
Date of publication2015-08-27 08:38:53
MaintainerAugustin Luna <lunaa@cbio.mskcc.org>
LicenseLGPL-3
Version1.2.5
https://github.com/cBioPortal/cgdsr

View on CRAN

Functions

CGDS Man page
cgdsr Man page
cgdsr-CGDS Man page
cgdsr-getCancerStudies Man page
cgdsr-getCaseLists Man page
cgdsr-getClinicalData Man page
cgdsr-getGeneticProfiles Man page
cgdsr-getMutationData Man page
cgdsr-getProfileData Man page
cgdsr-package Man page
cgdsr-plot Man page
cgdsr-processURL Man page
cgdsr-setPlotErrorMsg Man page
cgdsr-setVerbose Man page
cgdsr-test Man page
getCancerStudies Man page
getCancerStudies.CGDS Man page
getCaseLists Man page
getCaseLists.CGDS Man page
getClinicalData Man page
getClinicalData.CGDS Man page
getGeneticProfiles Man page
getGeneticProfiles.CGDS Man page
getMutationData Man page
getMutationData.CGDS Man page
getProfileData Man page
getProfileData.CGDS Man page
plot Man page
plot.CGDS Man page
processURL Man page
processURL.CGDS Man page
setPlotErrorMsg Man page
setPlotErrorMsg.CGDS Man page
setVerbose Man page
setVerbose.CGDS Man page
test Man page
test.CGDS Man page

Files

cgdsr
cgdsr/inst
cgdsr/inst/tests
cgdsr/inst/tests/test_cgdsr.R
cgdsr/inst/doc
cgdsr/inst/doc/cgdsr.Rnw
cgdsr/inst/doc/cgdsr.R
cgdsr/inst/doc/cgdsr.pdf
cgdsr/tests
cgdsr/tests/runTests.R
cgdsr/NAMESPACE
cgdsr/R
cgdsr/R/cgdsr.R
cgdsr/vignettes
cgdsr/vignettes/cgdsr.Rnw
cgdsr/MD5
cgdsr/build
cgdsr/build/vignette.rds
cgdsr/DESCRIPTION
cgdsr/man
cgdsr/man/cgdsr-setVerbose.Rd cgdsr/man/cgdsr-getCancerStudies.Rd cgdsr/man/cgdsr-test.Rd cgdsr/man/cgdsr-getClinicalData.Rd cgdsr/man/cgdsr-package.Rd cgdsr/man/cgdsr-getProfileData.Rd cgdsr/man/cgdsr-processURL.Rd cgdsr/man/cgdsr-getCaseLists.Rd cgdsr/man/cgdsr-getMutationData.Rd cgdsr/man/cgdsr-setPlotErrorMsg.Rd cgdsr/man/cgdsr-CGDS.Rd cgdsr/man/cgdsr-plot.Rd cgdsr/man/cgdsr-getGeneticProfiles.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.