Man pages for cgdsr
R-Based API for Accessing the MSKCC Cancer Genomics Data Server (CGDS)
| cgdsr-CGDS | Construct a CGDS connection object |
| cgdsr-getCancerStudies | Get available cancer studies available in CGDS |
| cgdsr-getCaseLists | Get available case lists for a specific cancer study |
| cgdsr-getClinicalData | Get clinical data for cancer study |
| cgdsr-getGeneticProfiles | Get available genetic data profiles for a specific cancer... |
| cgdsr-getMutationData | Get mutation data for cancer study |
| cgdsr-getProfileData | Retrieves genomic profile data for genes and genetic... |
| cgdsr-package | CGDS-R : a library for accessing data in the MSKCC Cancer... |
| cgdsr-plot | Generic plot function for CGDS API data. |
| cgdsr-processURL | Internal methods for CGDS library. |
| cgdsr-setPlotErrorMsg | Set custom plot error message |
| cgdsr-setVerbose | Set verbose logging level for CGDS function calls |
| cgdsr-test | Simple test suite for CGDS object. |
