plot_climate_scenarios: Plot multiple chilling scenario groups (or for other metrics)

In chillR: Statistical Methods for Phenology Analysis in Temperate Fruit Trees

Plot multiple chilling scenario groups (or for other metrics)

Description

For quantifying climate risks, it is useful to generate many version of plausible weather for particular climate scenarios. This can, for example, be done with the temperature_generation function. This function facilitates illustration of these results by providing various options to show them as boxplots. The function can plot either a single panel of climate scenarios or multiple panels side by side.

Usage

plot_climate_scenarios(
  climate_scenario_list,
  metric,
  metric_label,
  year_name = "End_year",
  label_sides = "both",
  ylim = c(0, NA),
  reference_line = NULL,
  col_rect = NA,
  col_line = NA,
  hist_col = NA,
  texcex = 2,
  caption_above = FALSE,
  family = "serif",
  no_scenario_numbers = FALSE
)

Arguments

climate_scenario_list	list of lists containing information about the chill scenarios. These lists must have an element named 'data' which should contain a data.frame with a column named the same as the 'metric' argument, which contains (numeric) information to be plotted. Additional optional elements are 'time_series' (Boolean, indicating if a time series is to be plotted), 'labels' (vector of length 'length(data)' containing labels for the scenarios - if this is a time series scenario, these must be numeric; if the data are not a time series, the labels aren't shown in the plot, because there wouldn't normally be enough space - only numbers are shown there, and the legend is provided in the value returned by this function), 'caption' (up to three character strings indicating the caption to be displayed in the respective plot panel; the elements of this vector are displayed on different lines. If caption_above==TRUE, only the first element is displayed) and 'historic_data' (a data.frame containing at least two columns named the same as 'metric' and 'year_name'). documentation of 'make_chill_scenario_plot' for details on these.
metric	character string corresponding to the name of the column that contains the data of interest in the climate_scenario_list data.frames (and if applicable the historic_data data.frame).
metric_label	character string specifying the y-axis label.
year_name	character string indicating the name of the time column in the historic_data data.frame.
label_sides	indicates what sides of the plot y-axis labels are to be drawn. Can be "left', "right" or "both". If label_sides assumes any other value, no labels are plotted.
ylim	numeric vector of length 2, specifying the lower and upper limits of the y-axis. If either of these two values is NA, it is automatically selected based on the data range.
reference_line	numeric vector of length 1, 2 or 3, specifying a horizontal reference bar to be drawn across the plot (e.g. to indicate exceedance of a threshold). A reference_line argument of length 1 is interpreted by drawing a line across the plot at the specified value. If length(reference_line)==2, the values are interpreted as lower and upper limit of a rectangular threshold area. If length(reference_line)==3, the lowest and highest values are used to draw a rectangle and the median value to draw a line (e.g. to show a best estimate and a confidence interval around it).
col_rect	color code or name for the color of the reference_line rectangle.
col_line	color code or name for the color of the reference_line line.
hist_col	color code or name for the color of the historic data points.
texcex	numeric variable indicating character size (cex for all text elements in the plot).
caption_above	Boolean variable indicating whether the caption should be drawn above (TRUE) or inside the figure.
family	character string specifying the font family ('serif', 'sans' or 'mono').
no_scenario_numbers	Boolean variable indicating whether climate scenarios should be numbered in the plot (this can clutter the figure).

Value

List of legends for the different panels of the plot. This list reads 'time series labels' for time series plot, 'no adequate labels provided' for unlabeled collections of boxplot, and a data.frame explaining the number codes used as the legend in labeled collections of boxplots. As a side effect, a plot of the climate scenarios is drawn.

The function generates errors, when problems arise.

Author(s)

Eike Luedeling

Examples

  #making 3 identical objects as scenarios; let's assume these represent the
  #years 2000, 2005 and 2010. 
  
  models<-list(Chilling_Hours=Chilling_Hours,Utah_Chill_Units=Utah_Model,Chill_Portions=
     Dynamic_Model,GDH=GDH)
  
  chill<-tempResponse(stack_hourly_temps(
     fix_weather(KA_weather[which(KA_weather$Year>2003),]),latitude=50.4),
     Start_JDay = 305,End_JDay = 60,models)
  scenario_results<-list(chill,chill,chill)
  
  climate_scenario_list<-list(list(data=scenario_results,
                                   caption=c("Historic","data"),
                                   time_series=TRUE,
                                   labels=c(2000,2005,2010),
                                   historic_data=chill),
                              list(data=scenario_results,
                                   caption=c("Scenario","1"),
                                   labels=c("Climate model 1",
                                            "Climate model 2",
                                            "Climate model 3")),
                              list(data=scenario_results,
                                   caption=c("Scenario","2")),
                              list(data=scenario_results,
                                   caption=c("Scenario","3")))
                                   
                                   
 plot_climate_scenarios(climate_scenario_list,metric="Chill_Portions",
                                 metric_label="Chill Portions",
                                 year_name="End_year",label_sides="both",
                                 reference_line=c(40,45,50),col_rect=NA,col_line=NA,
                                 texcex=2,caption_above=FALSE)
                                 
 plot_climate_scenarios(climate_scenario_list,"Chill_Portions","Chill Portions",
    texcex=1)

  
 

chillR documentation built on Nov. 28, 2023, 1:09 a.m.