remap_cifti | R Documentation |
Remap CIFTI data between two different spaces, such as between FreeSurfer fsaverage group data and fs_LR group data.
remap_cifti(
x,
cifti_target_fname = NULL,
remap_method = c("adaptive", "barycentric"),
areaL_original_fname = NULL,
areaR_original_fname = NULL,
areaL_target_fname = NULL,
areaR_target_fname = NULL,
sphereL_original_fname = NULL,
sphereR_original_fname = NULL,
sphereL_target_fname = NULL,
sphereR_target_fname = NULL,
write_dir = NULL,
mwall_values = c(NA, NaN),
verbose = TRUE
)
remapCIfTI(
x,
cifti_target_fname = NULL,
remap_method = c("adaptive", "barycentric"),
areaL_original_fname = NULL,
areaR_original_fname = NULL,
areaL_target_fname = NULL,
areaR_target_fname = NULL,
sphereL_original_fname = NULL,
sphereR_original_fname = NULL,
sphereL_target_fname = NULL,
sphereR_target_fname = NULL,
write_dir = NULL,
mwall_values = c(NA, NaN),
verbose = TRUE
)
remapcii(
x,
cifti_target_fname = NULL,
remap_method = c("adaptive", "barycentric"),
areaL_original_fname = NULL,
areaR_original_fname = NULL,
areaL_target_fname = NULL,
areaR_target_fname = NULL,
sphereL_original_fname = NULL,
sphereR_original_fname = NULL,
sphereL_target_fname = NULL,
sphereR_target_fname = NULL,
write_dir = NULL,
mwall_values = c(NA, NaN),
verbose = TRUE
)
remap_xifti(
x,
cifti_target_fname = NULL,
remap_method = c("adaptive", "barycentric"),
areaL_original_fname = NULL,
areaR_original_fname = NULL,
areaL_target_fname = NULL,
areaR_target_fname = NULL,
sphereL_original_fname = NULL,
sphereR_original_fname = NULL,
sphereL_target_fname = NULL,
sphereR_target_fname = NULL,
write_dir = NULL,
mwall_values = c(NA, NaN),
verbose = TRUE
)
x |
The CIFTI file name or |
cifti_target_fname |
File name for the resampled CIFTI. Will be placed
in |
remap_method |
For remapping fs_LR group data to fsaverage, barycentric should be used. For remapping FreeSurfer fsaverage group data to fs_LR, adaptive should be used. |
areaL_original_fname , areaL_target_fname |
File paths to the left cortex
surfaces to use for vertex area correction during adaptive resampling.
Required if |
areaR_original_fname , areaR_target_fname , sphereR_original_fname , sphereR_target_fname |
See the corresponding arguments for the left cortex. |
sphereL_original_fname , sphereL_target_fname |
File paths to the sphere surfaces in the original and target spaces, for the left cortex. |
write_dir |
Where to write the resampled CIFTI (and surfaces if present.)
If |
mwall_values |
If the medial wall locations are not indicated in the
CIFTI, and if Correctly indicating the medial wall locations is important for remapping, because the medial wall mask is taken into account during remapping calculations. |
verbose |
Should occasional updates be printed? Default: |
Can accept a "xifti"
object as well as a path to a CIFTI-file. If
the input "xifti"
object has surface geometry, it will be removed.
This function is in active development: its arguments and behavior may change greatly in future versions of the package.
Other manipulating xifti:
add_surf()
,
apply_parc()
,
apply_xifti()
,
combine_xifti()
,
convert_to_dlabel()
,
merge_xifti()
,
move_to_mwall()
,
newdata_xifti()
,
remove_xifti()
,
resample_cifti()
,
resample_cifti_from_template()
,
scale_xifti()
,
select_xifti()
,
set_names_xifti()
,
smooth_cifti()
,
transform_xifti()
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