heatmap_differential: heatmap_differential

In cinaR: A Computational Pipeline for Bulk 'ATAC-Seq' Profiles

heatmap_differential

Description

plot differentially accessible peaks for a given comparison

Usage

heatmap_differential(results, comparison = NULL, ...)

Arguments

results	cinaR result object
comparison	these are created by cinaR from 'contrasts' user provided. If not selected the first comparison will be shown!
...	additional arguments for heatmap function, for more info '?pheatmap'

Value

ggplot object

Examples

library(cinaR)
data(atac_seq_consensus_bm) # calls 'bed'

# a vector for comparing the examples
contrasts <- sapply(strsplit(colnames(bed), split = "-", fixed = TRUE),
                    function(x){x[1]})[4:25]

results <- cinaR(bed, contrasts, reference.genome = "mm10")

heatmap_differential(results)

cinaR documentation built on May 18, 2022, 5:12 p.m.