normalizeConsensus | R Documentation |
Normalizes consensus peak using different methods
normalizeConsensus(cp, norm.method = "cpm", log.option = FALSE)
cp |
bed formatted consensus peak matrix: CHR, START, STOP and raw peak counts (peaks by 3+samples) |
norm.method |
normalization method for consensus peaks |
log.option |
logical, log option for cpm function in edgeR |
Normalized consensus peaks
set.seed(123) cp <- matrix(rexp(200, rate=.1), ncol=20) ## using cpm function from `edgeR` package cp.normalized <- normalizeConsensus(cp) ## quantile normalization option cp.normalized <- normalizeConsensus(cp, norm.method = "quantile")
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