Files in cinaR

A Computational Pipeline for Bulk 'ATAC-Seq' Profiles

MD5

NEWS.md README.md

NAMESPACE

DESCRIPTION

R/visualization_functions.R R/example-data.R R/enrichment_functions.R R/cinaR.R R/color_values.R R/utils.R inst/doc/cinaR.Rmd

inst/doc/cinaR.html

inst/doc/cinaR.R

build/vignette.rds

vignettes/cinaR.Rmd

data/grch37.rda

data/grch38.rda

data/VP2008.rda

data/atac_seq_consensus_bm.rda

data/grcm38.rda

man/grcm38.Rd man/normalizeConsensus.Rd man/cinaR.Rd man/heatmap_var_peaks.Rd man/heatmap_differential.Rd man/vp2008.Rd man/bed.Rd man/run_enrichment.Rd man/pca_plot.Rd man/scale_rows.Rd man/annotatePeaks.Rd man/color_values.Rd man/grch37.Rd man/grch38.Rd man/GSEA.Rd man/filterConsensus.Rd man/verboseFn.Rd man/differentialAnalyses.Rd man/HPEA.Rd man/show_comparisons.Rd man/dot_plot.Rd

man/figures/unnamed-chunk-6-1.png

man/figures/unnamed-chunk-3-1.png

man/figures/unnamed-chunk-4-1.png

man/figures/cinaR.png

man/figures/unnamed-chunk-5-1.png

man/figures/[e-mail]

cinaR documentation built on May 18, 2022, 5:12 p.m.