Nothing
comparison.scheme
either set to OVO
(default) which will compare each contrasts to each other. If it's set to OVA
each contrast will be compared to rest. sv.number
is added if user wants to set the number of surrogate variables.
More info here.verbose
argument, default set to TRUE
. I think, I have implemented this in a really cool way!cinaRgenesets
added to vignette.heatmap_differential
function to be able to plot the heatmaps
of a given comparison.show_comparisons
is added to see the available comparisons
before you plot differential heatmaps.
Changed:
heatmap_plot
is now renamed to heatmap_var_peaks
, which makes more sense.This version is even cooler, lol:
contrast
ordercinaR
is published in CRAN repository!Any scripts or data that you put into this service are public.
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