clValid: Validation of Clustering Results

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Statistical and biological validation of clustering results.

Author
Guy Brock <guy.brock@louisville.edu>, Vasyl Pihur <vasyl.pihur@louisville.edu>, Susmita Datta <susmita.datta@louisville.edu>, and Somnath Datta <somnath.datta@louisville.edu>
Date of publication
2014-03-25 05:52:03
Maintainer
Guy Brock <guy.brock@louisville.edu>
License
LGPL-3
Version
0.6-6
URLs

View on CRAN

Man pages

annotationListToMatrix
Change annotation list to matrix
BHI
Biological Homogeneity Index
BSI
Biological Stability Index
clValid
Validate Cluster Results
clValid-class
Class "clValid"
clValid-internal
Internal clValid functions
connectivity
Connectivity Measure
dunn
Dunn Index
getRanksWeights
Extract ranks and weights from clValid object
mouse
Mouse Mesenchymal Cells
plot.sota
Plot Function for a SOTA Object
print.sota
Print Function for a SOTA Object
readAnnotationFile
Read in biological annotation files from external file
sota
Self-organizing Tree Algorithm (SOTA)
stability
Stability Measures

Files in this package

clValid
clValid/inst
clValid/inst/CITATION
clValid/inst/doc
clValid/inst/doc/clValid.pdf
clValid/inst/doc/clValid.R
clValid/inst/doc/clValid.Rnw
clValid/NAMESPACE
clValid/data
clValid/data/mouse.rda
clValid/R
clValid/R/clValid-functions.R
clValid/R/clValid-Classes.R
clValid/R/clValid-internal.R
clValid/R/clValid-Methods.R
clValid/vignettes
clValid/vignettes/ClusterRefs.bib
clValid/vignettes/fc.csv
clValid/vignettes/clValid.Rnw
clValid/vignettes/gbMacros.sty
clValid/MD5
clValid/build
clValid/build/vignette.rds
clValid/DESCRIPTION
clValid/ChangeLog
clValid/man
clValid/man/annotationListToMatrix.Rd
clValid/man/plot.sota.Rd
clValid/man/clValid-class.Rd
clValid/man/BSI.Rd
clValid/man/sota.Rd
clValid/man/getRanksWeights.Rd
clValid/man/BHI.Rd
clValid/man/connectivity.Rd
clValid/man/mouse.Rd
clValid/man/clValid.Rd
clValid/man/readAnnotationFile.Rd
clValid/man/dunn.Rd
clValid/man/stability.Rd
clValid/man/print.sota.Rd
clValid/man/clValid-internal.Rd