plot.sota: Plot Function for a SOTA Object

In clValid: Validation of Clustering Results

Description

'plot.sota' is used to obtain a visual representation of profiles within each individual cluster. Corresponding cluster average profiles are also available. By default, plots for all clusters are displayed side by side.

Usage

## S3 method for class 'sota'
plot(x, cl = 0, ...)

Arguments

x	SOTA object, an object returned by function sota.
cl	cl specifies which cluster is to be plotted by setting it to the cluster ID. By default, cl is equal to 0 and the function plots all clusters side by side.
...	Additional arguments to pass to plot.

Author(s)

Vasyl Pihur, Guy Brock, Susmita Datta, Somnath Datta

References

Herrero, J., Valencia, A, and Dopazo, J. (2005). A hierarchical unsupervised growing neural network for clustering gene expression patterns. Bioinformatics, 17, 126-136.

See Also

sota, print.sota

Examples

data(mouse)
express <- mouse[,c("M1","M2","M3","NC1","NC2","NC3")]
rownames(express) <- mouse$ID

sotaCl <- sota(as.matrix(express), 4)
names(sotaCl)
sotaCl
plot(sotaCl)
plot(sotaCl, cl=2)

clValid documentation built on Feb. 15, 2021, 1:08 a.m.