createanClique.XCMSnExp: 'createanClique.XCMSnExp' produces an object of class...
In cliqueMS: Annotation of Isotopes, Adducts and Fragmentation Adducts for in-Source LC/MS Metabolomics Data
Description
Usage
Arguments
See Also
Examples
Description
anClique creates an 'anClique' object from 'XCMSnExp' processed m/z data.
Usage
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## S3 method for class 'XCMSnExp'
createanClique(mzData)
Arguments
mzData
A 'XCMSnExp' object with processed m/z data.
See Also
Examples
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library(cliqueMS)
mzfile <- system.file("standards.mzXML", package = "cliqueMS")
rawMS <- MSnbase::readMSData(files = mzfile, mode = "onDisk")
cpw <- xcms::CentWaveParam(ppm = 15, peakwidth = c(5,20), snthresh = 10)
msnExp <- xcms::findChromPeaks(rawMS, cpw)
ex.anClique <- createanClique.XCMSnExp(msnExp)
summary(ex.anClique)
cliqueMS documentation built on May 1, 2019, 6:32 p.m.
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Description Usage Arguments See Also Examples
Description
anClique creates an 'anClique' object from 'XCMSnExp' processed m/z data.
Usage
1 2 | ## S3 method for class 'XCMSnExp'
createanClique(mzData)
|
Arguments
mzData |
A 'XCMSnExp' object with processed m/z data. |
See Also
Examples
1 2 3 4 5 6 7 | library(cliqueMS)
mzfile <- system.file("standards.mzXML", package = "cliqueMS")
rawMS <- MSnbase::readMSData(files = mzfile, mode = "onDisk")
cpw <- xcms::CentWaveParam(ppm = 15, peakwidth = c(5,20), snthresh = 10)
msnExp <- xcms::findChromPeaks(rawMS, cpw)
ex.anClique <- createanClique.XCMSnExp(msnExp)
summary(ex.anClique)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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