createanClique: 'createanClique' generic function to create an object of...
In cliqueMS: Annotation of Isotopes, Adducts and Fragmentation Adducts for in-Source LC/MS Metabolomics Data
Description
Usage
Arguments
See Also
Examples
Description
anClique creates an 'anClique' object from processed m/z data.
Usage
1
createanClique(mzData)
Arguments
mzData
An object with processed m/z data. See methods for
valid class types.
See Also
Examples
1
2
3
4
5
6
7
library(cliqueMS)
mzfile <- system.file("standards.mzXML", package = "cliqueMS")
rawMS <- MSnbase::readMSData(files = mzfile, mode = "onDisk")
cpw <- xcms::CentWaveParam(ppm = 15, peakwidth = c(5,20), snthresh = 10)
msnExp <- xcms::findChromPeaks(rawMS, cpw)
ex.anClique <- createanClique(msnExp = msnExp)
summary(ex.anClique)
cliqueMS documentation built on May 1, 2019, 6:32 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments See Also Examples
Description
anClique creates an 'anClique' object from processed m/z data.
Usage
1 | createanClique(mzData)
|
Arguments
mzData |
An object with processed m/z data. See methods for valid class types. |
See Also
Examples
1 2 3 4 5 6 7 | library(cliqueMS)
mzfile <- system.file("standards.mzXML", package = "cliqueMS")
rawMS <- MSnbase::readMSData(files = mzfile, mode = "onDisk")
cpw <- xcms::CentWaveParam(ppm = 15, peakwidth = c(5,20), snthresh = 10)
msnExp <- xcms::findChromPeaks(rawMS, cpw)
ex.anClique <- createanClique(msnExp = msnExp)
summary(ex.anClique)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.