API for clue
Cluster Ensembles

Global functions
CKME Man page
Cassini Man page
Complex.cl_hierarchy Source code
Complex.cl_partition Source code
GVME Man page
GVME_Consensus Man page
Kinship82 Man page
Kinship82_Consensus Man page
Math.cl_hierarchy Source code
Math.cl_partition Source code
Ops.cl_dendrogram Man page Source code
Ops.cl_hierarchy Man page Source code
Ops.cl_partition Man page Source code
Phonemes Man page
Summary.cl_hierarchy Man page Source code
Summary.cl_partition Man page Source code
Summary.cl_partition_ensemble Source code
as.cl_addtree Man page Source code
as.cl_addtree.default Source code
as.cl_addtree.phylo Source code
as.cl_class_ids Man page Source code
as.cl_dendrogram Man page Source code
as.cl_ensemble Man page Source code
as.cl_hard_partition Man page Source code
as.cl_hierarchy Man page Source code
as.cl_membership Man page Source code
as.cl_membership.default Source code
as.cl_membership.matrix Source code
as.cl_partition Man page Source code
as.cl_ultrametric Man page Source code
as.cl_ultrametric.default Source code
as.cl_ultrametric.matrix Source code
as.dendrogram.cl_ultrametric Source code
as.dist.cl_dissimilarity Source code
as.hclust.cl_hierarchy Source code
as.hclust.cl_ultrametric Source code
as.hclust.mona Source code
as.matrix.cl_proximity Source code
as.matrix.hclust Source code
as_cl_class_ids_or_membership Source code
c.cl_ensemble Source code
cl_addtree_from_addtree_approximation Source code
cl_addtree_from_veclh Source code
cl_agreement Man page Source code
cl_agreement_hierarchy_angle Source code
cl_agreement_hierarchy_cophenetic Source code
cl_agreement_hierarchy_euclidean Source code
cl_agreement_hierarchy_gamma Source code
cl_agreement_hierarchy_manhattan Source code
cl_agreement_partition_FM Source code
cl_agreement_partition_Jaccard Source code
cl_agreement_partition_KP Source code
cl_agreement_partition_NMI Source code
cl_agreement_partition_PS Source code
cl_agreement_partition_Rand Source code
cl_agreement_partition_angle Source code
cl_agreement_partition_cRand Source code
cl_agreement_partition_diag Source code
cl_agreement_partition_euclidean Source code
cl_agreement_partition_manhattan Source code
cl_agreement_partition_purity Source code
cl_bag Man page Source code
cl_boot Man page Source code
cl_class_ids Man page Source code
cl_class_ids.Mclust Source code
cl_class_ids.Weka_clusterer Source code
cl_class_ids.ccfkms Source code
cl_class_ids.cl_membership Source code
cl_class_ids.cl_partition Source code
cl_class_ids.cl_partition_by_class_ids Source code
cl_class_ids.default Source code
cl_class_ids.flexmix Source code
cl_class_ids.kcca Source code
cl_class_ids.kmeans Source code
cl_class_ids.movMF Source code
cl_class_ids.partition Source code
cl_class_ids.relation Source code
cl_class_ids.rock Source code
cl_class_ids.specc Source code
cl_class_ids_or_membership Source code
cl_class_labels Source code
cl_classes Man page Source code
cl_classes.cl_hierarchy Source code
cl_classes.cl_partition Source code
cl_classes.default Source code
cl_consensus Man page Source code
cl_consensus_hierarchy_cophenetic Source code
cl_consensus_hierarchy_majority Source code
cl_consensus_hierarchy_manhattan Source code
cl_consensus_method_default Source code
cl_consensus_partition_AOG Source code
cl_consensus_partition_AOS Source code
cl_consensus_partition_DWH Source code
cl_consensus_partition_GV1 Source code
cl_consensus_partition_GV3 Source code
cl_consensus_partition_hard_euclidean Source code
cl_consensus_partition_hard_manhattan Source code
cl_consensus_partition_hard_symdiff Source code
cl_consensus_partition_soft_euclidean Source code
cl_consensus_partition_soft_manhattan Source code
cl_consensus_partition_soft_symdiff Source code
cl_cross_proximity Source code
cl_dendrogram Man page
cl_dissimilarity Man page Source code
cl_dissimilarity_hierarchy_BO Source code
cl_dissimilarity_hierarchy_Chebyshev Source code
cl_dissimilarity_hierarchy_Lyapunov Source code
cl_dissimilarity_hierarchy_cophenetic Source code
cl_dissimilarity_hierarchy_euclidean Source code
cl_dissimilarity_hierarchy_gamma Source code
cl_dissimilarity_hierarchy_manhattan Source code
cl_dissimilarity_hierarchy_spectral Source code
cl_dissimilarity_hierarchy_symdiff Source code
cl_dissimilarity_partition_BA_A Source code
cl_dissimilarity_partition_BA_C Source code
cl_dissimilarity_partition_BA_E Source code
cl_dissimilarity_partition_CSSD Source code
cl_dissimilarity_partition_GV1 Source code
cl_dissimilarity_partition_Mallows Source code
cl_dissimilarity_partition_Rand Source code
cl_dissimilarity_partition_VI Source code
cl_dissimilarity_partition_comemberships Source code
cl_dissimilarity_partition_euclidean Source code
cl_dissimilarity_partition_manhattan Source code
cl_dissimilarity_partition_symdiff Source code
cl_ensemble Man page Source code
cl_ensemble_type Source code
cl_fuzziness Man page Source code
cl_fuzziness_partition_PC Source code
cl_fuzziness_partition_PE Source code
cl_hard_partition Man page
cl_hierarchy Man page
cl_join Man page Source code
cl_join_dendrogram Source code
cl_join_hierarchy Source code
cl_join_partition Source code
cl_margin Man page Source code
cl_medoid Man page Source code
cl_medoid_ids Source code
cl_medoid_ids.cl_pam Source code
cl_medoid_ids.clara Source code
cl_medoid_ids.kmedoids Source code
cl_medoid_ids.pam Source code
cl_meet Man page Source code
cl_meet_dendrogram Source code
cl_meet_hierarchy Source code
cl_meet_partition Source code
cl_membership Man page Source code
cl_membership.Mclust Source code
cl_membership.cl_membership Source code
cl_membership.cl_partition Source code
cl_membership.default Source code
cl_membership.fanny Source code
cl_membership.flexmix Source code
cl_membership.movMF Source code
cl_membership.pclust Source code
cl_membership_from_class_ids Source code
cl_membership_from_memberships Source code
cl_object_dissimilarities Source code
cl_object_labels Source code
cl_object_names Man page Source code
cl_object_names.cl_ensemble Source code
cl_object_names.cl_hierarchy Source code
cl_object_names.cl_membership Source code
cl_object_names.cl_partition Source code
cl_object_names.cl_ultrametric Source code
cl_object_names.default Source code
cl_object_names.dist Source code
cl_object_names.hclust Source code
cl_object_names.phylo Source code
cl_object_names.twins Source code
cl_pam Man page Source code
cl_partition Man page
cl_partition_by_class_ids Source code
cl_partition_by_memberships Source code
cl_pclust Man page Source code
cl_predict Man page Source code
cl_predict.Mclust Source code
cl_predict.Weka_clusterer Source code
cl_predict.ccfkms Source code
cl_predict.cclust Source code
cl_predict.cl_partition Source code
cl_predict.clara Source code
cl_predict.cshell Source code
cl_predict.default Source code
cl_predict.fanny Source code
cl_predict.fclust Source code
cl_predict.flexmix Source code
cl_predict.kmeans Source code
cl_predict.pam Source code
cl_predict.pclust Source code
cl_predict.rock Source code
cl_prototypes Man page Source code
cl_prototypes.Mclust Source code
cl_prototypes.cl_pam Source code
cl_prototypes.cl_partition Source code
cl_prototypes.clara Source code
cl_prototypes.kcca Source code
cl_prototypes.kmeans Source code
cl_prototypes.pam Source code
cl_prototypes.pclust Source code
cl_prototypes.specc Source code
cl_proximity Source code
cl_tabulate Man page Source code
cl_ultrametric Man page Source code
cl_ultrametric_from_classes Source code
cl_ultrametric_from_veclh Source code
cl_ultrametric_with_meta_added Source code
cl_validity Man page Source code
cl_validity.agnes Source code
cl_validity.cl_partition Source code
cl_validity.default Man page Source code
cl_validity.diana Source code
cl_validity.pclust Source code
cl_validity_hierarchy_deviance_a_f Source code
cl_validity_hierarchy_variance_a_f Source code
cl_validity_partition_d_a_f Source code
cophenetic.cl_ultrametric Source code
cophenetic.mona Source code
cscale Source code
cut.cl_dendrogram Source code
cxdist Source code
decompose_addtree Source code
dist_from_vector Source code
false Source code
fit_ultrametric_target Source code
get_cl_agreement_method Source code
get_cl_agreement_methods Source code
get_cl_consensus_method Source code
get_cl_consensus_methods Source code
get_cl_dissimilarity_method Source code
get_cl_dissimilarity_methods Source code
get_method_from_db Source code
get_methods_from_db Source code
get_properties Source code
get_property Source code
get_property_from_object_or_representation Source code
get_representation Source code
handle_weights_for_ultrametric_target_fitters Source code
has_object_dissimilarities Source code
has_object_memberships Source code
has_property Source code
is.cl_dendrogram Man page Source code
is.cl_dendrogram.hclust Source code
is.cl_dendrogram.phylo Source code
is.cl_ensemble Man page Source code
is.cl_hard_partition Man page Source code
is.cl_hard_partition.cl_partition Source code
is.cl_hard_partition.fanny Source code
is.cl_hierarchy Man page Source code
is.cl_hierarchy.hclust Source code
is.cl_hierarchy.phylo Source code
is.cl_partition Man page Source code
is.cl_soft_partition Man page Source code
kmedoids Man page Source code
l1_fit_M Source code
l1_fit_ultrametric Man page Source code
l1_fit_ultrametric_by_IRIP Source code
l1_fit_ultrametric_by_SUMT Source code
l1_fit_ultrametric_target Man page Source code
ls_fit_addtree Man page Source code
ls_fit_addtree_by_SUMT Source code
ls_fit_addtree_by_iterative_projection Source code
ls_fit_addtree_by_iterative_reduction Source code
ls_fit_centroid Man page Source code
ls_fit_sum_of_ultrametrics Man page Source code
ls_fit_ultrametric Man page Source code
ls_fit_ultrametric_by_SUMT Source code
ls_fit_ultrametric_by_iterative_projection Source code
ls_fit_ultrametric_by_iterative_reduction Source code
ls_fit_ultrametric_target Man page Source code
make_X_from_p Source code
make_centroid_matrix Source code
make_cl_membership Source code
make_container Source code
make_db_key Source code
make_penalty_function_addtree Source code
make_penalty_function_membership Source code
make_penalty_function_ultrametric Source code
make_penalty_gradient_addtree Source code
make_penalty_gradient_membership Source code
make_penalty_gradient_ultrametric Source code
maybe_is_proper_soft_partition Source code
maybe_is_proper_soft_partition.cl_partition Source code
maybe_is_proper_soft_partition.pclust Source code
memberships_from_cross_dissimilarities Source code
n_of_classes Man page Source code
n_of_classes.cl_membership Source code
n_of_classes.cl_partition Source code
n_of_classes.default Source code
n_of_classes.fanny Source code
n_of_classes.pclust Source code
n_of_nonzero_columns Source code
n_of_objects Man page Source code
n_of_objects.cl_ensemble Source code
n_of_objects.cl_hierarchy Source code
n_of_objects.cl_partition Source code
n_of_objects.default Source code
n_of_objects.dist Source code
n_of_objects.fclust Source code
n_of_objects.hclust Source code
n_of_objects.phylo Source code
names.cl_proximity Source code
non_additivity Source code
non_ultrametricity Source code
one_entry_per_column Source code
pava Source code
pclust Man page Source code
pclust_family Man page Source code
pclust_object Man page Source code
plot.cl_addtree Source code
plot.cl_dendrogram Man page Source code
plot.cl_ensemble Source code
plot.cl_ultrametric Source code
print.cl_class_ids Source code
print.cl_classes_of_hierarchy_of_objects Source code
print.cl_classes_of_partition_of_objects Source code
print.cl_cross_proximity Source code
print.cl_dendrogram Source code
print.cl_dendrogram_ensemble Source code
print.cl_ensemble Source code
print.cl_fuzziness Source code
print.cl_hierarchy Source code
print.cl_hierarchy_ensemble Source code
print.cl_membership Source code
print.cl_pam Source code
print.cl_partition Source code
print.cl_partition_by_class_ids Source code
print.cl_partition_by_memberships Source code
print.cl_partition_ensemble Source code
print.cl_pclust Source code
print.cl_proximity Source code
print.cl_validity Source code
print.kmedoids Source code
print.pclust Source code
print.solve_LSAP Source code
print_container Source code
project_to_leading_columns Source code
put_method_into_db Source code
random_stochastic_matrix Source code
rep.cl_ensemble Source code
rxdist Source code
set_cl_agreement_method Source code
set_cl_consensus_method Source code
set_cl_dissimilarity_method Source code
silhouette.cl_partition Source code
silhouette.cl_pclust Source code
solve_LSAP Man page Source code
stochastify Source code
structure Source code
sumt Man page Source code
symmetric_matrix_from_veclh Source code
true Source code
ultrametrify Source code
unique.cl_ensemble Source code
weighted_mean_of_object_dissimilarities Source code
weighted_median Source code
weighted_sum_of_matrices Source code
weighted_sum_of_vectors Source code
clue documentation built on Aug. 9, 2017, 9:05 a.m.