fieldmean_and_anomaly_map: A 'cmsaf' extension for creating both, a spatial mean and an...

In cmsafvis: Tools to Visualize CM SAF NetCDF Data

A 'cmsaf' extension for creating both, a spatial mean and an anomaly map.

Description

This plotting routine generates a graph showing the evolution of the spatial mean of a given variable and the corresponding anomaly map within the given time range and area. The intended application is for daily accumulated data, such as sunshine duration. Dependent on the output format a PNG or MP4 is created.

Usage

fieldmean_and_anomaly_map(
  config = NULL,
  variable = NULL,
  accumulate = FALSE,
  infile = NULL,
  temp_dir = tempdir(),
  out_dir = getwd(),
  climate_dir = NULL,
  climate_year_start,
  climate_year_end,
  show_extreme_climate_years = NULL,
  climatology_until_eoy = FALSE,
  start_date = NULL,
  end_date = NULL,
  country_code = "S_A",
  lon_min = NULL,
  lon_max = NULL,
  lat_min = NULL,
  lat_max = NULL,
  outfile_name = NULL,
  output_format = "animation",
  animation_pace = 0.07,
  freeze_animation = FALSE,
  min_value = NULL,
  max_value = NULL,
  nbreaks = NULL,
  language = "eng",
  keep_files = TRUE,
  states = FALSE,
  attach = FALSE,
  infile_attach = "auto",
  dwd_logo = FALSE,
  verbose = TRUE,
  nc = NULL
)

Arguments

config	Path to YAML config file (character). The config file does not have to specify all arguments. Each addressed argument has to be formatted according to the example config file: (#TODO: LINK EXAMPLE CONFIG FILE!).
variable	Name of variable in infile (NULL or character). If NULL then the first variable from the infile is taken.
accumulate	Whether the input file should be accumulated (logical).
infile	Path to NetCDF file (NULL or character). If NULL then it needs to be specified in the config file.
temp_dir	Path to temporary working directory (character).
out_dir	Path to output directory (character).
climate_dir	Path to directory in which climatology is computed or contained (NULL or character). If NULL then the temp_dir directory is taken.
climate_year_start	Start year of climatology (integer).
climate_year_end	End year of climatology (integer).
show_extreme_climate_years	Whether the minimum and maximum of the climate years should be titled in the fieldmean plot (NULL or logical). This is usually only of interest when plotting accumulated data. If the default NULL is chosen, then it will be set to the value of accumulate.
climatology_until_eoy	Plot the climatology and fieldmeans until the end of year (logical). Only affects fieldmean plots analyzed from January 1st.
start_date	Start date in format of 'YYYY-MM-DD' (NULL or character). If NULL then the first date of the infile is used.
end_date	End date in format of 'YYYY-MM-DD' (NULL or character). If NULL then the last date of the infile is used.
country_code	Either a country code in iso3c format or from the following: 'AFR' for Africa, 'EUR' for Europe, 'TOT' for the total disc, or 'S_A' for an arbitrary region selection (character). If a country is passed the data from within this country is extracted, else a rectangular box is visualized. Directly provided latitude and longitude ranges will be ignored in case of 'AFR', 'EUR' or 'TOT'.
lon_min	Longitude of lower left corner (NULL or numeric). If NULL then the smallest longitude of the infile is used.
lon_max	Longitude of upper right left corner (NULL or numeric). If NULL then the largest longitude of the infile is used.
lat_min	Latitude of lower left corner (NULL or numeric). If NULL then the smallest latitude of the infile is used.
lat_max	Latitude of upper right corner (NULL or numeric). If NULL then the largest latitude of the infile is used.
outfile_name	Filename of the PNG or MP4 outfile (NULL or character). If NULL then a name is computed from the current configuration. Please match the file ending according to the output_format.
output_format	Specification of output format (either 'graphic' for PNG or 'animation' for MP4).
animation_pace	Pace of the animation in seconds (positive numeric). This only has an effect if output_format == 'animation'.
freeze_animation	If TRUE then the animation will freeze at the last frame (logical).
min_value	Lower values than this are ignored (NULL or numeric). If NULL, no values are ignored.
max_value	Larger values than this are ignored (NULL or numeric). If NULL, no values are ignored.
nbreaks	Number of color breaks (NULL or positive integer). A value will be computed if NULL is passed.
language	Language used for title, legend, etc. in plots (either 'eng' for English or 'deu' for German).
keep_files	A flag indicating whether all files created in the process of obtaining the output file should be kept (logical). If false, all intermediate results are deleted, otherwise all are kept. Keeping these files could improve performance in further function calls.
states	Whether to crop/plot administration level of states (logical).
attach	Whether to temporaly merge the infile to an already existing one. (logical).
infile_attach	File to attach the infile to. When 'auto', a suitable file will be searched in out_dir. If attach is false, this will be ignored(character).
dwd_logo	Whether to add the DWD logo (logical).
verbose	Whether to display progress messages (logical).
nc	Alternatively to infile you can specify the input as an object of class ncdf4 (as returned from ncdf4::nc_open).

Details

You can pass a YAML config file and/or specify the arguments directly. Argument prioritization is done in the following way: Direct argument > config argument > default argument. Thus, if you pass a existing config file but also want to modify a specific argument you can do that easily.

cmsafvis documentation built on Sept. 30, 2024, 5:07 p.m.