add_notches | Add notch-like gaussian snippets to an existing signal x |
apply_dc_meta | Apply extracted properties of a data collection to a data... |
average_R2_dflst | Computes the R^2 (variance explained) between two lists of... |
BGFA_cocoreg_interface | Apply GFA using the same interface as cocoreg() |
BGFA_joint_info | Project BGFA components common to all datasets back to the... |
cocoreg | The Common Components by Regression (CoCoReg) algorithm |
cocoreg_by_path | Compute D_joint for dataset i separately for all paths Can be... |
compose | Calculate the composition formed by applying all functions in... |
compose_all | Calculate the average of the composition formed by applying... |
create_mappings | Generate all possible pairwise mappings between the given... |
create_syndata_mv | Create multivariate synthetic data |
create_syn_data_puvar | A data collection with variables that "become unrelated... |
create_syndata_pwl | A non-linear data collection using piecewise linearity |
create_syn_data_toy | An illustrative synthetic data collection |
create_syn_data_uds | A data collection with one unrelated dataset |
create_syn_data_uvar | A collection with unrelated variables |
create_Z_linear | Contains functions to create synthetic datasets with... |
cshift | Circularly shift vector elements |
data_collections2ggdf | Catenate a set of data collections (lists of data.frames)... |
data_matrix_rmse | Compute RMSE between data.matrices dm1 and dm2 |
dc_variability | Compute ds_variability for all datasets in a data collection |
df_ggplot_melt | Melt data.frame into ggplottable format |
dflst2array | Catenate a list of data.frames to a matrix along dim |
dflst2df | Catenate a list of data.frames vertically to a single... |
dflst2dfmelt | Combine a list of data.frames to a single molten data.frame |
dflst_add_ds | Add a data.frame (dataset) to a list of data.frames... |
dflst_dsnames2varnames | Append dataset names to variable names of the respective... |
dflst_pca | Apply PCA to the data after catenating data.frames... |
df_scale | Apply scale on a numeric data.frame |
df_scale_ols | Scales variables in data.frame dfx using ordinary least... |
dl_remove_NA | Remove rows with NA values from a list of data.frames |
dl_scale | Run scale() on a list of data.frames |
ds_variability | Compute variability_components for a dataset |
generate_mapping_function | Generate a mapping function between two datasets |
generate_paths | Generate all/some paths between points |
generate_paths_cyclic | Generate cyclic paths |
generate_paths_noncyclic | Generate non-cyclic paths |
get_dc_meta | Extract important properties of data collection |
get_range_datalist | Get [min, max] of a list of numeric objects |
get_starting_dataset | Helper function to get the starting dataset based on a path. |
ggcompare_dclst | Compare data collections variable by variable |
ggplot_dclst | Plotting data collections using ggplot |
ggplot_df | Plotting data.frame using ggplot |
ggplot_dflst | Plot a list of data.frames using ggplot2 |
make_data_gauss_2d | Make 2D gauss data (maybe obsolete) |
mapping_glmnet | Define a mapping function using glmnet::glmnet |
mapping_lm | Mapping stats::lm |
mapping_lmridge | Define a mapping function using MASS::lm.ridge |
mapping_pcr | Define a mapping function using pls::pcr |
mapping_rf | Mapping randomForest |
mapping_rlm | Mapping MASS::rlm |
mappings_R2_matrix | Extract R2 values from a list of mappings using summary() |
mapping_svm | Mapping svm |
mapping_svm_sigmoid | Mapping svm using sigmoid |
matrix_variability | Compute "variance" of the matrices using Frobenius norm.... |
nplst_reorder_grid | Reorders a nested list of ggplots |
pathify | Create a path |
PCA_cocoreg_interface | PCA projection using cocoreg interface |
rename_variables | Rename variables of a data collection |
repmat | Replicate matrix to create a larger one |
RGCCA_cocoreg_interface | COCOREG style analysis using RGCCA projection |
rmse | Compute RMSE between vectors v1 and v2 |
rotation_matrix | A rotation matrix |
row_suffle_variability | Determine the variability of matrices under row shuffling |
SCA_cocoreg_interface | SCA projection using cocoreg interface |
se | Standard error of mean |
ss | Sum of squares |
svm_sigmoid | SVM using sigmoid kernel |
to_unit_vec | Make vector of unit norm |
traverse_nested_list | Apply fun to the bottom level of a nested list structure |
validate_data | Validate a data collection for use with cocoreg |
var_explained | Sum-of-squares values showing what portion of variance in... |
variability_components | Compute total, within group and between group variability... |
variation_shared_by | Return a specific variation component |
vecnorm | Compute Euclidean norm of vector |
vector_variability | Compute "variance" of the vectors var() |
wrapper_BGFA | Run BGFA by Klami et. al. using data format conventions of... |
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