BGFA_cocoreg_interface: Apply GFA using the same interface as cocoreg()

Description Usage Arguments Value

View source: R/common_tools.R

Description

Note: if K is too high GFA() might not converge in a meaningful time or the computation may mysteriously crash.

Usage

1
BGFA_cocoreg_interface(df_list, K = 8, Nrep = 2, threshold = 0.001)

Arguments

df_list

[1,m] list of data.frames, Input data to GFA in COCOREG format

K

[1,1] int, (Maximum) number of GFA components

Nrep

[1,1] int, Number of random initialization used for learning the model

threshold

[1,1] double, GFA model trimming threshold

Value

A list with elements:

$data:

[1,m] list of data.frames, Original data reconstructed using only those latent components that are active in all datasets

$model:

a list, Non-trimmed output of CCAGFA::GFA()

$dataid:

string, Dataset identifier string

$method:

string, Analysis method identifier string

$wall_time_taken:

[1,1] double, Time taken to run the analysis in seconds


cocoreg documentation built on May 31, 2017, 5:18 a.m.

Search within the cocoreg package
Search all R packages, documentation and source code