cocorresp: Co-Correspondence Analysis Methods

Fits predictive and symmetric co-correspondence analysis (CoCA) models to relate one data matrix to another data matrix. More specifically, CoCA maximises the weighted covariance between the weighted averaged species scores of one community and the weighted averaged species scores of another community. CoCA attempts to find patterns that are common to both communities.

AuthorOriginal Matlab routines by C.J.F. ter Braak and A.P. Schaffers. R port by Gavin L. Simpson. Function simpls based on simpls.fit (package pls) by Ron Wehrens and Bjorn-Helge Mevik.
Date of publication2016-02-29 01:16:09
MaintainerGavin L. Simpson <ucfagls@gmail.com>
LicenseGPL-2
Version0.3-0
https://github.com/gavinsimpson/cocorresp

View on CRAN

Files in this package

cocorresp
cocorresp/inst
cocorresp/inst/CITATION
cocorresp/inst/ChangeLog
cocorresp/inst/doc
cocorresp/inst/doc/cocorresp-intro.html
cocorresp/inst/doc/cocorresp-intro.R
cocorresp/inst/doc/cocorresp-intro.Rmd
cocorresp/tests
cocorresp/tests/Examples
cocorresp/tests/Examples/cocorresp-Ex.Rout.save
cocorresp/tests/testthat
cocorresp/tests/testthat/test-coinertia.R
cocorresp/tests/testthat/test-crossval.R
cocorresp/tests/testthat/test-envfit-coca.R
cocorresp/tests/testthat/test-permutest.R
cocorresp/tests/testthat/test-coca.R
cocorresp/tests/test-all.R
cocorresp/NAMESPACE
cocorresp/data
cocorresp/data/vascular.rda
cocorresp/data/bryophyte.rda
cocorresp/data/beetles.rda
cocorresp/data/verges.rda
cocorresp/data/plants.rda
cocorresp/R
cocorresp/R/scaleChi.R cocorresp/R/fitted.symcoca.R cocorresp/R/resid.symcoca.R cocorresp/R/crossval.R cocorresp/R/plot.predcoca.R cocorresp/R/eigenvals.coca.R cocorresp/R/permutest.coca.R cocorresp/R/scores.predcoca.R cocorresp/R/screeplot.symcoca.R cocorresp/R/plot.symcoca.R cocorresp/R/summary.predcoca.R cocorresp/R/rescale.R cocorresp/R/predcoca.simpls.R cocorresp/R/coca.formula.R cocorresp/R/print.summary.coinertia.R cocorresp/R/scores.symcoca.R cocorresp/R/predcoca.eigen.R cocorresp/R/simpls.R cocorresp/R/print.fitted.symcoca.R cocorresp/R/weights.R cocorresp/R/coca.R cocorresp/R/summary.permutest.coca.R cocorresp/R/symcoca.R cocorresp/R/print.predcoca.R cocorresp/R/summary.symcoca.R cocorresp/R/coca.default.R cocorresp/R/points.coca.R cocorresp/R/print.crossval.R cocorresp/R/corAxis.R cocorresp/R/fitCoinertia.R cocorresp/R/coinertia.R cocorresp/R/print.summary.symcoca.R cocorresp/R/envfit.coca.R cocorresp/R/print.summary.predcoca.R cocorresp/R/print.coinertia.R cocorresp/R/coinertiaI.R cocorresp/R/print.permutest.coca.R cocorresp/R/print.summary.permutest.coca.R cocorresp/R/summary.coinertia.R cocorresp/R/summary.crossval.R cocorresp/R/mcChi.R cocorresp/R/rescale.default.R cocorresp/R/rescale.symcoca.R cocorresp/R/print.summary.crossval.R cocorresp/R/print.symcoca.R
cocorresp/vignettes
cocorresp/vignettes/cocorresp-intro.Rmd
cocorresp/README.md
cocorresp/MD5
cocorresp/build
cocorresp/build/vignette.rds
cocorresp/DESCRIPTION
cocorresp/man
cocorresp/man/scaleChi.Rd cocorresp/man/fitCoinertia.Rd cocorresp/man/coinertiaI.Rd cocorresp/man/plot.symcoca.Rd cocorresp/man/coca.Rd cocorresp/man/screeplot.symcoca.Rd cocorresp/man/plot.predcoca.Rd cocorresp/man/envfit.coca.Rd cocorresp/man/summary.predcoca.Rd cocorresp/man/cocorresp-package.Rd cocorresp/man/fitted.symcoca.Rd cocorresp/man/permutest.coca.Rd cocorresp/man/mcChi.Rd cocorresp/man/rescale.Rd cocorresp/man/coinertia.Rd cocorresp/man/beetles.Rd cocorresp/man/scores.predcoca.Rd cocorresp/man/bryophyte.Rd cocorresp/man/weights.Rd cocorresp/man/points.coca.Rd cocorresp/man/crossval.Rd cocorresp/man/simpls.Rd cocorresp/man/resid.symcoca.Rd cocorresp/man/cocorresp-internal.Rd cocorresp/man/corAxis.Rd

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