cocorresp: Co-Correspondence Analysis Methods

Fits predictive and symmetric co-correspondence analysis (CoCA) models to relate one data matrix to another data matrix. More specifically, CoCA maximises the weighted covariance between the weighted averaged species scores of one community and the weighted averaged species scores of another community. CoCA attempts to find patterns that are common to both communities.

Install the latest version of this package by entering the following in R:
install.packages("cocorresp")
AuthorOriginal Matlab routines by C.J.F. ter Braak and A.P. Schaffers. R port by Gavin L. Simpson. Function simpls based on simpls.fit (package pls) by Ron Wehrens and Bjorn-Helge Mevik.
Date of publication2016-02-29 01:16:09
MaintainerGavin L. Simpson <ucfagls@gmail.com>
LicenseGPL-2
Version0.3-0
https://github.com/gavinsimpson/cocorresp

View on CRAN

Functions

beetles Man page
bryophyte Man page
coca Man page
coca.default Man page
coca.formula Man page
cocorresp Man page
cocorresp-package Man page
coinertia Man page
coinertia.default Man page
coinertiaI Man page
corAxis Man page
corAxis.default Man page
corAxis.symcoca Man page
crossval Man page
envfit.coca Man page
fitCoinertia Man page
fitted.symcoca Man page
mcChi Man page
mcLin Man page
permutest.coca Man page
plants Man page
plot.predcoca Man page
plot.symcoca Man page
points.coca Man page
predcoca.eigen Man page
predcoca.simpls Man page
print.coinertia Man page
print.crossval Man page
print.fitCoinertia Man page
print.fitted.symcoca Man page
print.permutest.coca Man page
print.predcoca Man page
print.summary.coinertia Man page
print.summary.crossval Man page
print.summary.fitCoinertia Man page
print.summary.permutest.coca Man page
print.summary.predcoca Man page
print.summary.symcoca Man page
print.symcoca Man page
rescale Man page
rescale.default Man page
rescale.symcoca Man page
resid.symcoca Man page
scaleChi Man page
scaleLin Man page
scores.predcoca Man page
scores.symcoca Man page
screeplot.symcoca Man page
simpls Man page
summary.coinertia Man page
summary.crossval Man page
summary.fitCoinertia Man page
summary.permutest.coca Man page
summary.predcoca Man page
summary.symcoca Man page
symcoca Man page
vascular Man page
verges Man page
weights.predcoca Man page
weights.symcoca Man page

Files

inst
inst/CITATION
inst/ChangeLog
inst/doc
inst/doc/cocorresp-intro.html
inst/doc/cocorresp-intro.R
inst/doc/cocorresp-intro.Rmd
tests
tests/Examples
tests/Examples/cocorresp-Ex.Rout.save
tests/testthat
tests/testthat/test-coinertia.R tests/testthat/test-crossval.R tests/testthat/test-envfit-coca.R tests/testthat/test-permutest.R tests/testthat/test-coca.R tests/test-all.R
NAMESPACE
data
data/vascular.rda
data/bryophyte.rda
data/beetles.rda
data/verges.rda
data/plants.rda
R
R/scaleChi.R R/fitted.symcoca.R R/resid.symcoca.R R/crossval.R R/plot.predcoca.R R/eigenvals.coca.R R/permutest.coca.R R/scores.predcoca.R R/screeplot.symcoca.R R/plot.symcoca.R R/summary.predcoca.R R/rescale.R R/predcoca.simpls.R R/coca.formula.R R/print.summary.coinertia.R R/scores.symcoca.R R/predcoca.eigen.R R/simpls.R R/print.fitted.symcoca.R R/weights.R R/coca.R R/summary.permutest.coca.R R/symcoca.R R/print.predcoca.R R/summary.symcoca.R R/coca.default.R R/points.coca.R R/print.crossval.R R/corAxis.R R/fitCoinertia.R R/coinertia.R R/print.summary.symcoca.R R/envfit.coca.R R/print.summary.predcoca.R R/print.coinertia.R R/coinertiaI.R R/print.permutest.coca.R R/print.summary.permutest.coca.R R/summary.coinertia.R R/summary.crossval.R R/mcChi.R R/rescale.default.R R/rescale.symcoca.R R/print.summary.crossval.R R/print.symcoca.R
vignettes
vignettes/cocorresp-intro.Rmd
README.md
MD5
build
build/vignette.rds
DESCRIPTION
man
man/scaleChi.Rd man/fitCoinertia.Rd man/coinertiaI.Rd man/plot.symcoca.Rd man/coca.Rd man/screeplot.symcoca.Rd man/plot.predcoca.Rd man/envfit.coca.Rd man/summary.predcoca.Rd man/cocorresp-package.Rd man/fitted.symcoca.Rd man/permutest.coca.Rd man/mcChi.Rd man/rescale.Rd man/coinertia.Rd man/beetles.Rd man/scores.predcoca.Rd man/bryophyte.Rd man/weights.Rd man/points.coca.Rd man/crossval.Rd man/simpls.Rd man/resid.symcoca.Rd man/cocorresp-internal.Rd man/corAxis.Rd

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