tag: Derive tag SNPs using heirarchical clustering
In colocPropTest: Proportional Testing for Colocalisation Analysis
tag R Documentation
Derive tag SNPs using heirarchical clustering
Description
Uses complete linkage and the hclust function to define clusters,
then cuts the tree at 1-tag.threshold
Usage
tag(r2, r2_threshold = 0.95, quiet = FALSE, method = "complete")
Arguments
r2
matrix of rsquared values
r2_threshold
only 1 of a set of snps with r2 > r2_threshold will be kept
quiet
if FALSE (default), show progress messages
method
method used for heirarchical clustering. See hclust for options.
Value
character vector, names are snps, values are the tag for each SNP
Author(s)
Chris Wallace
colocPropTest documentation built on June 24, 2024, 9:08 a.m.
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| tag | R Documentation |
Derive tag SNPs using heirarchical clustering
Description
Uses complete linkage and the hclust function to define clusters,
then cuts the tree at 1-tag.threshold
Usage
tag(r2, r2_threshold = 0.95, quiet = FALSE, method = "complete")
Arguments
r2 |
matrix of rsquared values |
r2_threshold |
only 1 of a set of snps with r2 > r2_threshold will be kept |
quiet |
if FALSE (default), show progress messages |
method |
method used for heirarchical clustering. See hclust for options. |
Value
character vector, names are snps, values are the tag for each SNP
Author(s)
Chris Wallace
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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