compareGroups: Descriptive Analysis by Groups

Create data summaries for quality control, extensive reports for exploring data, as well aspublication-ready univariate or bivariate tablesin several formats (plain text, HTML,LaTeX, PDF, Word or Excel. Create figuresto quickly visualise the distribution of your data (boxplots, barplots, normality-plots, etc.). Display statistics(mean, median, frequencies, incidences, etc.). Perform the appropriate tests(t-test, Analysis of variance, Kruskal-Wallis, Fisher, log-rank, ...) depending on the nature of the described variable (normal, non-normal or qualitative). Summarize genetic data(Single Nucleotide Polymorphisms) data displaying Allele Frequencies and performing Hardy-Weinberg Equilibrium tests among other typical statistics and tests for these kind of data.

Install the latest version of this package by entering the following in R:
install.packages("compareGroups")
AuthorIsaac Subirana, Joan Vila, Hctor Sanz, Gavin Lucas, Judith Peafiel and David Gimnez
Date of publication2017-03-14 14:45:02
MaintainerIsaac Subirana <isubirana@imim.es>
LicenseGPL (>= 2)
Version3.2.4
http://www.comparegroups.eu

View on CRAN

Functions

bar2.plot Man page
bar.plot Man page
box.plot Man page
cGroupsGUI Man page
cGroupsWUI Man page
chisq.test2 Man page
combn2 Man page
compareGroups Man page
compareGroups.default Man page
compareGroups.formula Man page
compareGroups-internal Man page
compareGroups-package Man page
compare.i Man page
compareSNPs Man page
Cox.plot Man page
createTable Man page
descrip Man page
descripSurv Man page
export2csv Man page
export2html Man page
export2latex Man page
export2latex.cbind.createTable Man page
export2latex.createTable Man page
export2md Man page
export2pdf Man page
export2word Man page
export2xls Man page
flip Man page
format2 Man page
getResults Man page
KMg.plot Man page
KM.plot Man page
logrank.pval Man page
missingTable Man page
norm.plot Man page
plot.compareGroups Man page
plot.createTable Man page
predimed Man page
prepare Man page
print.compareGroups Man page
print.compareSNPs Man page
print.createTable Man page
print.summary.compareGroups Man page
print.summary.createTable Man page
printTable Man page
radiograph Man page
rcorr.cens.pval Man page
regicor Man page
report Man page
signifdec Man page
signifdec.i Man page
simplify.formula Man page
summary.compareGroups Man page
summary.createTable Man page
summ.i Man page
table.i Man page
udpate.formula2 Man page
update.compareGroups Man page
varinfo Man page
varinfo.compareGroups Man page
varinfo.createTable Man page

Files

inst
inst/exdata
inst/exdata/regicor.dat
inst/exdata/regicor.sav
inst/exdata/predimed.csv
inst/exdata/predimed.dat
inst/exdata/regicor.csv
inst/exdata/predimed.xlsx
inst/exdata/predimed.xls
inst/exdata/predimed.sav
inst/app
inst/app/ui.R inst/app/server.R
inst/app/www
inst/app/www/bootstrap.journal.min.css
inst/app/www/examples
inst/app/www/examples/example3.png
inst/app/www/examples/example4.png
inst/app/www/examples/example5.png
inst/app/www/examples/example6.png
inst/app/www/examples/example7.png
inst/app/www/examples/example1.png
inst/app/www/examples/example2.png
inst/app/www/images
inst/app/www/images/loading.gif
inst/app/www/bootstrap.slate.min.css
inst/app/www/bootstrap.spacelab.min.css
inst/app/www/bootstrap.cerulean.min.css
inst/app/www/bootstrap.paper.min.css
inst/app/www/bootstrap.cosmo.min.css
inst/app/www/bootstrap.yeti.min.css
inst/app/www/bootstrap.united.min.css
inst/app/www/bootstrap.darkly.min.css
inst/app/www/bootstrap.simplex.min.css
inst/app/www/bootstrap.lumen.min.css
inst/app/www/bootstrap.superhero.min.css
inst/app/www/bootstrap.sandstone.min.css
inst/app/www/bootstrap.cyborg.min.css
inst/app/www/bootstrap.readable.min.css
inst/app/www/bootstrap.flatly.min.css
inst/app/www/tablePDF6755.pdf
inst/app/spss_varlist.R
inst/app/help.html
inst/app/global.R
inst/CITATION
inst/doc
inst/doc/compareGroups_vignette.R
inst/doc/compareGroups_vignette.Rmd
inst/doc/changelog
inst/doc/compareGroups_vignette.html
NAMESPACE
data
data/predimed.rda
data/regicor.rda
R
R/createTable.R R/z[.compareGroups.R R/plot.createTable.R R/z[.createTable.R R/export2html.R R/print.createTable.R R/getResults.R R/KMg.plot.R R/cGroupsGUI.R R/compare.i.R R/update.compareGroups.R R/plot.compareGroups.R R/compareGroups.R R/cbind.createTable.R R/radiograph.R R/logrank.pval.R R/report.R R/snpQC.R R/cGroupsWUI.R R/combn2.R R/table.i.R R/flip.R R/print.summary.compareGroups.R R/formula.compareGroups.R R/export2xls.R R/varinfo.createTable.R R/bar2.plot.R R/printTable.R R/varinfo.compareGroups.R R/chisq.test2.R R/export2word.R R/compareSNPs.R R/export2csv.R R/z[.rbind.createTable.R R/rbind.createTable.R R/export2latex.R R/descripSurv.R R/z[.cbind.createTable.R R/print.cbind.createTable.R R/missingTable.R R/print.compareSNPs.r R/bar.plot.R R/export2latex.createTable.R R/export2pdf.R R/signifdec.i.R R/simplify.formula.R R/norm.plot.R R/summary.compareGroups.R R/summ.i.R R/summary.createTable.R R/print.summary.createTable.r R/format2.R R/rbind.compareGroups.R R/compareGroups.formula.R R/signifdec.R R/box.plot.R R/KM.plot.R R/Cox.plot.R R/export2md.R R/export2latex.cbind.createTable.R R/compareGroups.default.R R/print.compareGroups.R R/compareGroups-internal.R R/z[.rbind.compareGroups.R R/prepare.r R/varinfo.R R/update.formula2.R R/descrip.R
vignettes
vignettes/figures
vignettes/figures/classes.tex
vignettes/figures/WUI
vignettes/figures/WUI/step3.png
vignettes/figures/WUI/step6b2.png
vignettes/figures/WUI/step5b.png
vignettes/figures/WUI/step6a.png
vignettes/figures/WUI/step1.png
vignettes/figures/WUI/step6d.png
vignettes/figures/WUI/step2.png
vignettes/figures/WUI/step5c1.png
vignettes/figures/WUI/step5d.png
vignettes/figures/WUI/step7a.png
vignettes/figures/WUI/step7.png
vignettes/figures/WUI/step5a.png
vignettes/figures/WUI/step4.png
vignettes/figures/WUI/step7b.png
vignettes/figures/WUI/step6c.png
vignettes/figures/WUI/step6b3.png
vignettes/figures/WUI/step6b1.png
vignettes/figures/WUI/step5c2.png
vignettes/figures/WUI/step8.png
vignettes/figures/univar
vignettes/figures/univar/age.png
vignettes/figures/univar/sex.png
vignettes/figures/univar/tmain.png
vignettes/figures/bivarsurv
vignettes/figures/bivarsurv/age.png
vignettes/figures/bivarsurv/sex.png
vignettes/figures/classes.png
vignettes/figures/bivar
vignettes/figures/bivar/age.png
vignettes/figures/bivar/sex.png
vignettes/figures/bivar/tmain.png
vignettes/figures/classes.pdf
vignettes/figures/GUI
vignettes/figures/GUI/step1_load_data.JPG
vignettes/figures/GUI/or_rr.png
vignettes/figures/GUI/step2_select_row_variables.png
vignettes/figures/GUI/toevent.png
vignettes/figures/GUI/step5_select_method.png
vignettes/figures/GUI/step6_subsetting.png
vignettes/figures/GUI/step8_export_table.png
vignettes/figures/GUI/step3_select_group_variable.png
vignettes/figures/GUI/step7_report_options.png
vignettes/figures/GUI/step4_hide_categ.png
vignettes/figures/GUI/xxxx.png
vignettes/compareGroups_vignette.Rmd
vignettes/compareGroups_vignette.bib
MD5
build
build/vignette.rds
DESCRIPTION
man
man/compareGroups-package.Rd man/printTable.Rd man/regicor.Rd man/cGroupsGUI.Rd man/export2html.Rd man/varinfo.Rd man/compareGroups.Rd man/export2xls.Rd man/compareGroups-internal.Rd man/export2word.Rd man/export2md.Rd man/cGroupsWUI.Rd man/predimed.Rd man/radiograph.Rd man/export2csv.Rd man/missingTable.Rd man/export2latex.Rd man/compareSNPs.Rd man/report.Rd man/createTable.Rd man/getResults.Rd man/export2pdf.Rd

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