compareGroups: Descriptive Analysis by Groups

Create data summaries for quality control, extensive reports for exploring data, as well aspublication-ready univariate or bivariate tablesin several formats (plain text, HTML,LaTeX, PDF, Word or Excel. Create figuresto quickly visualise the distribution of your data (boxplots, barplots, normality-plots, etc.). Display statistics(mean, median, frequencies, incidences, etc.). Perform the appropriate tests(t-test, Analysis of variance, Kruskal-Wallis, Fisher, log-rank, ...) depending on the nature of the described variable (normal, non-normal or qualitative). Summarize genetic data(Single Nucleotide Polymorphisms) data displaying Allele Frequencies and performing Hardy-Weinberg Equilibrium tests among other typical statistics and tests for these kind of data.

AuthorIsaac Subirana, Joan Vila, Hctor Sanz, Gavin Lucas, Judith Peafiel and David Gimnez
Date of publication2017-03-14 14:45:02
MaintainerIsaac Subirana <isubirana@imim.es>
LicenseGPL (>= 2)
Version3.2.4
http://www.comparegroups.eu

View on CRAN

Functions

bar2.plot Man page
bar.plot Man page
box.plot Man page
cGroupsGUI Man page
cGroupsWUI Man page
chisq.test2 Man page
combn2 Man page
compareGroups Man page
compareGroups.default Man page
compareGroups.formula Man page
compareGroups-internal Man page
compareGroups-package Man page
compareGroups-package Man page
compare.i Man page
compareSNPs Man page
Cox.plot Man page
createTable Man page
descrip Man page
descripSurv Man page
export2csv Man page
export2html Man page
export2latex Man page
export2latex.cbind.createTable Man page
export2latex.createTable Man page
export2md Man page
export2pdf Man page
export2word Man page
export2xls Man page
flip Man page
format2 Man page
getResults Man page
KMg.plot Man page
KM.plot Man page
logrank.pval Man page
missingTable Man page
norm.plot Man page
plot.compareGroups Man page
plot.createTable Man page
predimed Man page
prepare Man page
print.compareGroups Man page
print.compareSNPs Man page
print.createTable Man page
print.summary.compareGroups Man page
print.summary.createTable Man page
printTable Man page
radiograph Man page
rcorr.cens.pval Man page
regicor Man page
report Man page
signifdec Man page
signifdec.i Man page
simplify.formula Man page
summary.compareGroups Man page
summary.createTable Man page
summ.i Man page
table.i Man page
udpate.formula2 Man page
update.compareGroups Man page
varinfo Man page
varinfo.compareGroups Man page
varinfo.createTable Man page

Files

compareGroups
compareGroups/inst
compareGroups/inst/exdata
compareGroups/inst/exdata/regicor.dat
compareGroups/inst/exdata/regicor.sav
compareGroups/inst/exdata/predimed.csv
compareGroups/inst/exdata/predimed.dat
compareGroups/inst/exdata/regicor.csv
compareGroups/inst/exdata/predimed.xlsx
compareGroups/inst/exdata/predimed.xls
compareGroups/inst/exdata/predimed.sav
compareGroups/inst/app
compareGroups/inst/app/ui.R
compareGroups/inst/app/server.R
compareGroups/inst/app/www
compareGroups/inst/app/www/bootstrap.journal.min.css
compareGroups/inst/app/www/examples
compareGroups/inst/app/www/examples/example3.png
compareGroups/inst/app/www/examples/example4.png
compareGroups/inst/app/www/examples/example5.png
compareGroups/inst/app/www/examples/example6.png
compareGroups/inst/app/www/examples/example7.png
compareGroups/inst/app/www/examples/example1.png
compareGroups/inst/app/www/examples/example2.png
compareGroups/inst/app/www/images
compareGroups/inst/app/www/images/loading.gif
compareGroups/inst/app/www/bootstrap.slate.min.css
compareGroups/inst/app/www/bootstrap.spacelab.min.css
compareGroups/inst/app/www/bootstrap.cerulean.min.css
compareGroups/inst/app/www/bootstrap.paper.min.css
compareGroups/inst/app/www/bootstrap.cosmo.min.css
compareGroups/inst/app/www/bootstrap.yeti.min.css
compareGroups/inst/app/www/bootstrap.united.min.css
compareGroups/inst/app/www/bootstrap.darkly.min.css
compareGroups/inst/app/www/bootstrap.simplex.min.css
compareGroups/inst/app/www/bootstrap.lumen.min.css
compareGroups/inst/app/www/bootstrap.superhero.min.css
compareGroups/inst/app/www/bootstrap.sandstone.min.css
compareGroups/inst/app/www/bootstrap.cyborg.min.css
compareGroups/inst/app/www/bootstrap.readable.min.css
compareGroups/inst/app/www/bootstrap.flatly.min.css
compareGroups/inst/app/www/tablePDF6755.pdf
compareGroups/inst/app/spss_varlist.R
compareGroups/inst/app/help.html
compareGroups/inst/app/global.R
compareGroups/inst/CITATION
compareGroups/inst/doc
compareGroups/inst/doc/compareGroups_vignette.R
compareGroups/inst/doc/compareGroups_vignette.Rmd
compareGroups/inst/doc/changelog
compareGroups/inst/doc/compareGroups_vignette.html
compareGroups/NAMESPACE
compareGroups/data
compareGroups/data/predimed.rda
compareGroups/data/regicor.rda
compareGroups/R
compareGroups/R/createTable.R compareGroups/R/z[.compareGroups.R compareGroups/R/plot.createTable.R compareGroups/R/z[.createTable.R compareGroups/R/export2html.R compareGroups/R/print.createTable.R compareGroups/R/getResults.R compareGroups/R/KMg.plot.R compareGroups/R/cGroupsGUI.R compareGroups/R/compare.i.R compareGroups/R/update.compareGroups.R compareGroups/R/plot.compareGroups.R compareGroups/R/compareGroups.R compareGroups/R/cbind.createTable.R compareGroups/R/radiograph.R compareGroups/R/logrank.pval.R compareGroups/R/report.R compareGroups/R/snpQC.R compareGroups/R/cGroupsWUI.R compareGroups/R/combn2.R compareGroups/R/table.i.R compareGroups/R/flip.R compareGroups/R/print.summary.compareGroups.R compareGroups/R/formula.compareGroups.R compareGroups/R/export2xls.R compareGroups/R/varinfo.createTable.R compareGroups/R/bar2.plot.R compareGroups/R/printTable.R compareGroups/R/varinfo.compareGroups.R compareGroups/R/chisq.test2.R compareGroups/R/export2word.R compareGroups/R/compareSNPs.R compareGroups/R/export2csv.R compareGroups/R/z[.rbind.createTable.R compareGroups/R/rbind.createTable.R compareGroups/R/export2latex.R compareGroups/R/descripSurv.R compareGroups/R/z[.cbind.createTable.R compareGroups/R/print.cbind.createTable.R compareGroups/R/missingTable.R
compareGroups/R/print.compareSNPs.r
compareGroups/R/bar.plot.R compareGroups/R/export2latex.createTable.R compareGroups/R/export2pdf.R compareGroups/R/signifdec.i.R compareGroups/R/simplify.formula.R compareGroups/R/norm.plot.R compareGroups/R/summary.compareGroups.R compareGroups/R/summ.i.R compareGroups/R/summary.createTable.R
compareGroups/R/print.summary.createTable.r
compareGroups/R/format2.R compareGroups/R/rbind.compareGroups.R compareGroups/R/compareGroups.formula.R compareGroups/R/signifdec.R compareGroups/R/box.plot.R compareGroups/R/KM.plot.R compareGroups/R/Cox.plot.R compareGroups/R/export2md.R compareGroups/R/export2latex.cbind.createTable.R compareGroups/R/compareGroups.default.R compareGroups/R/print.compareGroups.R compareGroups/R/compareGroups-internal.R compareGroups/R/z[.rbind.compareGroups.R
compareGroups/R/prepare.r
compareGroups/R/varinfo.R compareGroups/R/update.formula2.R compareGroups/R/descrip.R
compareGroups/vignettes
compareGroups/vignettes/figures
compareGroups/vignettes/figures/classes.tex
compareGroups/vignettes/figures/WUI
compareGroups/vignettes/figures/WUI/step3.png
compareGroups/vignettes/figures/WUI/step6b2.png
compareGroups/vignettes/figures/WUI/step5b.png
compareGroups/vignettes/figures/WUI/step6a.png
compareGroups/vignettes/figures/WUI/step1.png
compareGroups/vignettes/figures/WUI/step6d.png
compareGroups/vignettes/figures/WUI/step2.png
compareGroups/vignettes/figures/WUI/step5c1.png
compareGroups/vignettes/figures/WUI/step5d.png
compareGroups/vignettes/figures/WUI/step7a.png
compareGroups/vignettes/figures/WUI/step7.png
compareGroups/vignettes/figures/WUI/step5a.png
compareGroups/vignettes/figures/WUI/step4.png
compareGroups/vignettes/figures/WUI/step7b.png
compareGroups/vignettes/figures/WUI/step6c.png
compareGroups/vignettes/figures/WUI/step6b3.png
compareGroups/vignettes/figures/WUI/step6b1.png
compareGroups/vignettes/figures/WUI/step5c2.png
compareGroups/vignettes/figures/WUI/step8.png
compareGroups/vignettes/figures/univar
compareGroups/vignettes/figures/univar/age.png
compareGroups/vignettes/figures/univar/sex.png
compareGroups/vignettes/figures/univar/tmain.png
compareGroups/vignettes/figures/bivarsurv
compareGroups/vignettes/figures/bivarsurv/age.png
compareGroups/vignettes/figures/bivarsurv/sex.png
compareGroups/vignettes/figures/classes.png
compareGroups/vignettes/figures/bivar
compareGroups/vignettes/figures/bivar/age.png
compareGroups/vignettes/figures/bivar/sex.png
compareGroups/vignettes/figures/bivar/tmain.png
compareGroups/vignettes/figures/classes.pdf
compareGroups/vignettes/figures/GUI
compareGroups/vignettes/figures/GUI/step1_load_data.JPG
compareGroups/vignettes/figures/GUI/or_rr.png
compareGroups/vignettes/figures/GUI/step2_select_row_variables.png
compareGroups/vignettes/figures/GUI/toevent.png
compareGroups/vignettes/figures/GUI/step5_select_method.png
compareGroups/vignettes/figures/GUI/step6_subsetting.png
compareGroups/vignettes/figures/GUI/step8_export_table.png
compareGroups/vignettes/figures/GUI/step3_select_group_variable.png
compareGroups/vignettes/figures/GUI/step7_report_options.png
compareGroups/vignettes/figures/GUI/step4_hide_categ.png
compareGroups/vignettes/figures/GUI/xxxx.png
compareGroups/vignettes/compareGroups_vignette.Rmd
compareGroups/vignettes/compareGroups_vignette.bib
compareGroups/MD5
compareGroups/build
compareGroups/build/vignette.rds
compareGroups/DESCRIPTION
compareGroups/man
compareGroups/man/compareGroups-package.Rd compareGroups/man/printTable.Rd compareGroups/man/regicor.Rd compareGroups/man/cGroupsGUI.Rd compareGroups/man/export2html.Rd compareGroups/man/varinfo.Rd compareGroups/man/compareGroups.Rd compareGroups/man/export2xls.Rd compareGroups/man/compareGroups-internal.Rd compareGroups/man/export2word.Rd compareGroups/man/export2md.Rd compareGroups/man/cGroupsWUI.Rd compareGroups/man/predimed.Rd compareGroups/man/radiograph.Rd compareGroups/man/export2csv.Rd compareGroups/man/missingTable.Rd compareGroups/man/export2latex.Rd compareGroups/man/compareSNPs.Rd compareGroups/man/report.Rd compareGroups/man/createTable.Rd compareGroups/man/getResults.Rd compareGroups/man/export2pdf.Rd

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