compareGroups: Descriptive Analysis by Groups

Create data summaries for quality control, extensive reports for exploring data, as well aspublication-ready univariate or bivariate tablesin several formats (plain text, HTML,LaTeX, PDF, Word or Excel. Perform figuresto quickly visualise the distribution of your data (boxplots, barplots, normality-plots, etc.). Display statistics(mean, median, frequencies, incidences, etc.). Perform the appropriate tests(t-test, Analysis of variance, Kruskal-Wallis, Fisher, log-rank, ...) depending on the nature of the described variable (normal, non-normal or qualitative). Summarize genetic data(Single Nucleotids Polymorphisms) data displaying Allele Frequencies and performing Hardy-Weinberg Equilibrium tests among other typical statistics and tests for these kind of data.

Author
Isaac Subirana, Joan Vila, Hctor Sanz, Gavin Lucas, Judith Peafiel and David Gimnez
Date of publication
2016-05-14 00:10:24
Maintainer
Isaac Subirana <isubirana@imim.es>
License
GPL (>= 2)
Version
3.2.1
URLs

View on CRAN

Man pages

cGroupsGUI
Graphical user interface to create tables of descriptives by...
cGroupsWUI
Web User Interface.
compareGroups
Descriptives by groups
compareGroups-internal
Internal compareGroups functions
compareGroups-package
Descriptive analysis by groups
compareSNPs
Summarise genetic data by groups.
createTable
Table of descriptives by groups: bivariate table
export2csv
Exporting descriptives table to plain text (CSV) format
export2html
Exporting descriptives table to HTML format
export2latex
Exporting descriptives table to LaTeX format
export2md
Exporting descriptives table to Markdown format
export2pdf
Exports tables to PDF files.
export2word
Exports tables to Word files.
export2xls
Exporting descriptives table to Exel format (.xlsx or .xls)
getResults
Easily retrieve summary data as R-objects (matrices and...
missingTable
Table of missingness counts by groups.
predimed
PREDIMED randomized trial
printTable
'Nice' table format.
radiograph
Lists the values in the data set.
regicor
REGICOR cross-sectional data
report
Report of descriptive tables and plots.
varinfo
Variable names and labels extraction

Files in this package

compareGroups
compareGroups/inst
compareGroups/inst/exdata
compareGroups/inst/exdata/regicor.dat
compareGroups/inst/exdata/regicor.sav
compareGroups/inst/exdata/predimed.csv
compareGroups/inst/exdata/predimed.dat
compareGroups/inst/exdata/regicor.csv
compareGroups/inst/exdata/predimed.xlsx
compareGroups/inst/exdata/predimed.xls
compareGroups/inst/exdata/predimed.sav
compareGroups/inst/app
compareGroups/inst/app/ui.R
compareGroups/inst/app/server.R
compareGroups/inst/app/www
compareGroups/inst/app/www/bootstrap.journal.min.css
compareGroups/inst/app/www/examples
compareGroups/inst/app/www/examples/example3.png
compareGroups/inst/app/www/examples/example4.png
compareGroups/inst/app/www/examples/example5.png
compareGroups/inst/app/www/examples/example6.png
compareGroups/inst/app/www/examples/example7.png
compareGroups/inst/app/www/examples/example1.png
compareGroups/inst/app/www/examples/example2.png
compareGroups/inst/app/www/images
compareGroups/inst/app/www/images/loading.gif
compareGroups/inst/app/www/bootstrap.slate.min.css
compareGroups/inst/app/www/bootstrap.spacelab.min.css
compareGroups/inst/app/www/bootstrap.cerulean.min.css
compareGroups/inst/app/www/bootstrap.paper.min.css
compareGroups/inst/app/www/bootstrap.cosmo.min.css
compareGroups/inst/app/www/bootstrap.yeti.min.css
compareGroups/inst/app/www/bootstrap.united.min.css
compareGroups/inst/app/www/bootstrap.darkly.min.css
compareGroups/inst/app/www/bootstrap.simplex.min.css
compareGroups/inst/app/www/bootstrap.lumen.min.css
compareGroups/inst/app/www/bootstrap.superhero.min.css
compareGroups/inst/app/www/bootstrap.sandstone.min.css
compareGroups/inst/app/www/bootstrap.cyborg.min.css
compareGroups/inst/app/www/bootstrap.readable.min.css
compareGroups/inst/app/www/bootstrap.flatly.min.css
compareGroups/inst/app/www/tablePDF6755.pdf
compareGroups/inst/app/spss_varlist.R
compareGroups/inst/app/help.html
compareGroups/inst/app/global.R
compareGroups/inst/CITATION
compareGroups/inst/doc
compareGroups/inst/doc/compareGroups_vignette.R
compareGroups/inst/doc/compareGroups_vignette.Rmd
compareGroups/inst/doc/changelog
compareGroups/inst/doc/compareGroups_vignette.html
compareGroups/NAMESPACE
compareGroups/data
compareGroups/data/predimed.rda
compareGroups/data/regicor.rda
compareGroups/R
compareGroups/R/createTable.R
compareGroups/R/z[.compareGroups.R
compareGroups/R/plot.createTable.R
compareGroups/R/z[.createTable.R
compareGroups/R/export2html.R
compareGroups/R/print.createTable.R
compareGroups/R/getResults.R
compareGroups/R/KMg.plot.R
compareGroups/R/cGroupsGUI.R
compareGroups/R/compare.i.R
compareGroups/R/update.compareGroups.R
compareGroups/R/plot.compareGroups.R
compareGroups/R/compareGroups.R
compareGroups/R/cbind.createTable.R
compareGroups/R/radiograph.R
compareGroups/R/logrank.pval.R
compareGroups/R/report.R
compareGroups/R/snpQC.R
compareGroups/R/cGroupsWUI.R
compareGroups/R/combn2.R
compareGroups/R/table.i.R
compareGroups/R/flip.R
compareGroups/R/print.summary.compareGroups.R
compareGroups/R/formula.compareGroups.R
compareGroups/R/export2xls.R
compareGroups/R/varinfo.createTable.R
compareGroups/R/bar2.plot.R
compareGroups/R/printTable.R
compareGroups/R/varinfo.compareGroups.R
compareGroups/R/chisq.test2.R
compareGroups/R/export2word.R
compareGroups/R/compareSNPs.R
compareGroups/R/export2csv.R
compareGroups/R/z[.rbind.createTable.R
compareGroups/R/rbind.createTable.R
compareGroups/R/export2latex.R
compareGroups/R/descripSurv.R
compareGroups/R/z[.cbind.createTable.R
compareGroups/R/print.cbind.createTable.R
compareGroups/R/missingTable.R
compareGroups/R/print.compareSNPs.r
compareGroups/R/bar.plot.R
compareGroups/R/export2latex.createTable.R
compareGroups/R/export2pdf.R
compareGroups/R/signifdec.i.R
compareGroups/R/simplify.formula.R
compareGroups/R/norm.plot.R
compareGroups/R/summary.compareGroups.R
compareGroups/R/summ.i.R
compareGroups/R/summary.createTable.R
compareGroups/R/print.summary.createTable.r
compareGroups/R/format2.R
compareGroups/R/rbind.compareGroups.R
compareGroups/R/compareGroups.formula.R
compareGroups/R/signifdec.R
compareGroups/R/box.plot.R
compareGroups/R/KM.plot.R
compareGroups/R/Cox.plot.R
compareGroups/R/export2md.R
compareGroups/R/export2latex.cbind.createTable.R
compareGroups/R/compareGroups.default.R
compareGroups/R/print.compareGroups.R
compareGroups/R/compareGroups-internal.R
compareGroups/R/z[.rbind.compareGroups.R
compareGroups/R/prepare.r
compareGroups/R/varinfo.R
compareGroups/R/update.formula2.R
compareGroups/R/descrip.R
compareGroups/vignettes
compareGroups/vignettes/figures
compareGroups/vignettes/figures/classes.tex
compareGroups/vignettes/figures/WUI
compareGroups/vignettes/figures/WUI/step3.png
compareGroups/vignettes/figures/WUI/step6b2.png
compareGroups/vignettes/figures/WUI/step5b.png
compareGroups/vignettes/figures/WUI/step6a.png
compareGroups/vignettes/figures/WUI/step1.png
compareGroups/vignettes/figures/WUI/step6d.png
compareGroups/vignettes/figures/WUI/step2.png
compareGroups/vignettes/figures/WUI/step5c1.png
compareGroups/vignettes/figures/WUI/step5d.png
compareGroups/vignettes/figures/WUI/step7a.png
compareGroups/vignettes/figures/WUI/step7.png
compareGroups/vignettes/figures/WUI/step5a.png
compareGroups/vignettes/figures/WUI/step4.png
compareGroups/vignettes/figures/WUI/step7b.png
compareGroups/vignettes/figures/WUI/step6c.png
compareGroups/vignettes/figures/WUI/step6b3.png
compareGroups/vignettes/figures/WUI/step6b1.png
compareGroups/vignettes/figures/WUI/step5c2.png
compareGroups/vignettes/figures/WUI/step8.png
compareGroups/vignettes/figures/univar
compareGroups/vignettes/figures/univar/age.png
compareGroups/vignettes/figures/univar/sex.png
compareGroups/vignettes/figures/univar/tmain.png
compareGroups/vignettes/figures/bivarsurv
compareGroups/vignettes/figures/bivarsurv/age.png
compareGroups/vignettes/figures/bivarsurv/sex.png
compareGroups/vignettes/figures/classes.png
compareGroups/vignettes/figures/bivar
compareGroups/vignettes/figures/bivar/age.png
compareGroups/vignettes/figures/bivar/sex.png
compareGroups/vignettes/figures/bivar/tmain.png
compareGroups/vignettes/figures/classes.pdf
compareGroups/vignettes/figures/GUI
compareGroups/vignettes/figures/GUI/step1_load_data.JPG
compareGroups/vignettes/figures/GUI/or_rr.png
compareGroups/vignettes/figures/GUI/step2_select_row_variables.png
compareGroups/vignettes/figures/GUI/toevent.png
compareGroups/vignettes/figures/GUI/step5_select_method.png
compareGroups/vignettes/figures/GUI/step6_subsetting.png
compareGroups/vignettes/figures/GUI/step8_export_table.png
compareGroups/vignettes/figures/GUI/step3_select_group_variable.png
compareGroups/vignettes/figures/GUI/step7_report_options.png
compareGroups/vignettes/figures/GUI/step4_hide_categ.png
compareGroups/vignettes/figures/GUI/xxxx.png
compareGroups/vignettes/compareGroups_vignette.Rmd
compareGroups/vignettes/compareGroups_vignette.bib
compareGroups/MD5
compareGroups/build
compareGroups/build/vignette.rds
compareGroups/DESCRIPTION
compareGroups/man
compareGroups/man/compareGroups-package.Rd
compareGroups/man/printTable.Rd
compareGroups/man/regicor.Rd
compareGroups/man/cGroupsGUI.Rd
compareGroups/man/export2html.Rd
compareGroups/man/varinfo.Rd
compareGroups/man/compareGroups.Rd
compareGroups/man/export2xls.Rd
compareGroups/man/compareGroups-internal.Rd
compareGroups/man/export2word.Rd
compareGroups/man/export2md.Rd
compareGroups/man/cGroupsWUI.Rd
compareGroups/man/predimed.Rd
compareGroups/man/radiograph.Rd
compareGroups/man/export2csv.Rd
compareGroups/man/missingTable.Rd
compareGroups/man/export2latex.Rd
compareGroups/man/compareSNPs.Rd
compareGroups/man/report.Rd
compareGroups/man/createTable.Rd
compareGroups/man/getResults.Rd
compareGroups/man/export2pdf.Rd