View source: R/padjustCompareGroups.R
padjustCompareGroups | R Documentation |
Given a compareGroups object, returns their p-values adjusted using one of several methods (stats::p.adjust)
padjustCompareGroups(object_compare, p = "p.overall", method = "BH")
object_compare |
object of class |
p |
character string. Specify which p-value must be corrected. Possible values are 'p.overall' and 'p.trend' (default: 'p.overall') |
method |
Correction method, a character string. Can be abbreviated (see |
compareGroups class with corrected p-values
Jordi Real <jordireal<at>gmail.com>
# Define simulated data set.seed(123) N_obs<-100 N_vars<-50 data<-matrix(rnorm(N_obs*N_vars), N_obs, N_vars) sim_data<-data.frame(data,Y=rbinom(N_obs,1,0.5)) # Execute compareGroups res<-compareGroups(Y~.,data=sim_data) res # update p values res_adjusted<-padjustCompareGroups(res) res_adjusted # update p values using FDR method res_adjusted<-padjustCompareGroups(res, method ="fdr") res_adjusted
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