Man pages for compendiumdb
Tools for Retrieval and Storage of Functional Genomics Data
| checkUpdates | Check whether GSE records have been updated on GEO |
| compendiumdb-package | Tools for Retrieval and Storage of Functional Genomics Data |
| connectDatabase | Create connection with the MySQL compendium database |
| createESET | Create a Bioconductor ExpressionSet |
| downloadGEOdata | Download a GSE record from GEO |
| GDSforGSE | Retrieve information about a GDS for a given GSE |
| GSEforGPL | Retrieve information about a GSE for a given GPL |
| GSEinDB | Retrieve information about a GSE loaded in the compendium... |
| GSMdescriptions | List sample annotation of samples for a given GSE |
| loadDatabaseSchema | Load the compendium database schema |
| loadDataToCompendium | Load GSE into the compendium database |
| removeGSE | Remove a GSE from the compendium database |
| tagExperiment | Tag an experiment with text labels |
| updatePhenoData | Update the phenotypic data of a GSE record |
