GDSforGSE: Retrieve information about a GDS for a given GSE

In compendiumdb: Tools for Retrieval and Storage of Functional Genomics Data

Description

Retrieve information about the GDS(s) corresponding to given GSE ID

Usage

GDSforGSE(con, GSEid)

Arguments

con	list containing a connection object specifying the user name and password to connect or interact with the compendium database (see connectDatabase)
GSEid	character string specifying the GSE ID

Details

The GEO staff manually curates part of the records in GEO and reassembles biologically and statistically comparable records into a GEO dataset (GDS). This function allows the user to check if the series record (GSE) has been manually curated by GEO and has a corresponding GDS ID.

Value

An object of class data.frame returned by GSEinDB giving detailed information on the corresponding GDS(s).

Author(s)

Umesh K. Nandal

See Also

GSEinDB

Examples

 ## Not run: 
  conn <- connectDatabase(user="usrname",password="passwd",dbname="compendium")
  # Retrieve information about GDSs corresponding to GSE1657
  GDSforGSE(conn,c("GSE1657"))
 
## End(Not run)

compendiumdb documentation built on May 2, 2019, 4:06 p.m.