removeGSE: Remove a GSE from the compendium database

In compendiumdb: Tools for Retrieval and Storage of Functional Genomics Data

Description

Remove a GEO series (GSE) record and other entries corresponding to it from the compendium database

Usage

removeGSE(con, GSEid)

Arguments

con	list containing a connection object specifying the user name and password to connect or interact with the compendium database (see connectDatabase)
GSEid	character string specifying the GSE ID to be removed

Details

A side effect of this function is that the corresponding GPL is also removed from the compendium database if the removed GSE was the only one with this GPL ID.

Author(s)

Umesh K. Nandal

Examples

 ## Not run: 
  conn <- connectDatabase(user="usrname",password="passwd",dbname="compendium")
  removeGSE(conn,"GSE23183")
 
## End(Not run)

compendiumdb documentation built on May 2, 2019, 4:06 p.m.