compound.Cox: Estimation, Gene Selection, and Survival Prediction Based on the Compound Covariate Method Under the Cox Proportional Hazard Model
Version 3.3

Estimation, gene selection, and survival prediction based on the compound covariate method under the Cox model with high-dimensional gene expressions. Available are survival data for non-small-cell lung cancer patients with gene expressions (Chen et al 2007 New Engl J Med) , statistical methods in Emura et al (2012 PLoS ONE) and Emura & Chen (2016 Stat Methods Med Res) . Algorithms for generating correlated gene expressions are also available.

AuthorTakeshi Emura, Hsuan-Yu Chen, Yi-Hau Chen
Date of publication2017-03-18 17:52:02 UTC
MaintainerTakeshi Emura <takeshiemura@gmail.com>
LicenseGPL-2
Version3.3
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("compound.Cox")

Getting started

Package overview

Popular man pages

CG.Clayton: Copula-graphic estimator under the Clayton copula.
cindex.CV: Cross-validated c-index for measuring the predictive accuracy...
compound.Cox-package: Estimation, Gene Selection, and Survival Prediction Based on...
compound.reg: Compound shrinkage estimation under the Cox proportional...
dependCox.reg.CV: Cox regression under dependent censoring.
X.pathway: Generate a matrix of gene expressions in the presence of...
X.tag: Generate a matrix of gene expressions in the presence of tag...
See all...

All man pages Function index File listing

Man pages

CG.Clayton: Copula-graphic estimator under the Clayton copula.
cindex.CV: Cross-validated c-index for measuring the predictive accuracy...
compound.Cox-package: Estimation, Gene Selection, and Survival Prediction Based on...
compound.reg: Compound shrinkage estimation under the Cox proportional...
dependCox.reg: Univariate Cox regression under dependent censoring.
dependCox.reg.CV: Cox regression under dependent censoring.
Lung: Survival data for patients with non-small-cell lung cancer.
PBC: Primary biliary cirrhosis (PBC) of the liver data
uni.selection: Gene selection based on the univariate Cox regression
X.pathway: Generate a matrix of gene expressions in the presence of...
X.tag: Generate a matrix of gene expressions in the presence of tag...

Functions

CG.Clayton Man page Source code
Lung Man page
PBC Man page
X.pathway Man page Source code
X.tag Man page Source code
cindex.CV Man page Source code
compound.Cox Man page
compound.Cox-package Man page
compound.reg Man page Source code
dependCox.reg Man page Source code
dependCox.reg.CV Man page Source code
uni.selection Man page Source code

Files

NAMESPACE
data
data/Lung.rda
data/PBC.rda
R
R/X.pathway.R
R/cindex.CV.R
R/CG.Clayton.R
R/uni.select.R
R/compound.reg.R
R/dependCox.reg.R
R/dependCox.reg.CV.R
R/X.tag.R
MD5
DESCRIPTION
man
man/X.pathway.Rd
man/compound.Cox-package.Rd
man/CG.Clayton.Rd
man/X.tag.Rd
man/Lung.Rd
man/PBC.Rd
man/dependCox.reg.CV.Rd
man/dependCox.reg.Rd
man/uni.selection.Rd
man/compound.reg.Rd
man/cindex.CV.Rd
compound.Cox documentation built on May 20, 2017, 2:20 a.m.

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