compound.Cox: Estimation and Gene Selection Based on the Compound Covariate Method Under the Cox Proportional Hazard Model

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Cox regression for survival data with high-dimensional gene expressions. Available are statistical methods in Emura et al (2012 PLoS ONE) <DOI:10.1371/journal.pone.0047627> and Emura & Chen (2016 Stat Methods Med Res) <DOI:10.1177/0962280214533378> and a survival dataset for non-small-cell lung cancer patients in Chen et al (2007 New Engl J Med) <DOI:10.1056/NEJMoa060096>.

Author
Takeshi Emura, Hsuan-Yu Chen, Yi-Hau Chen
Date of publication
2016-11-28 13:04:35
Maintainer
Takeshi Emura <takeshiemura@gmail.com>
License
GPL-2
Version
3.0

View on CRAN

Man pages

CG.Clayton
Copula-graphic estimator under the Clayton copula.
cindex.CV
Cross-validated c-index for measuring the predictive accuracy...
compound.Cox-package
Estimation and Gene Selection Based on the Compound Covariate...
compound.reg
Compound shrinkage estimation under the Cox proportional...
dependCox.reg
Univariate Cox regression under dependent censoring.
dependCox.reg.CV
Cox regression under dependent censoring.
Lung
Survival data for patients with non-small-cell lung cancer.
PBC
Primary biliary cirrhosis (PBC) of the liver data
X.pathway
Generate a matrix of gene expressions in the presence of...
X.tag
Generate a matrix of gene expressions in the presence of tag...

Files in this package

compound.Cox
compound.Cox/NAMESPACE
compound.Cox/data
compound.Cox/data/Lung.rda
compound.Cox/data/PBC.rda
compound.Cox/R
compound.Cox/R/X.pathway.R
compound.Cox/R/cindex.CV.R
compound.Cox/R/CG.Clayton.R
compound.Cox/R/compound.reg.R
compound.Cox/R/dependCox.reg.R
compound.Cox/R/dependCox.reg.CV.R
compound.Cox/R/X.tag.R
compound.Cox/MD5
compound.Cox/DESCRIPTION
compound.Cox/man
compound.Cox/man/X.pathway.Rd
compound.Cox/man/compound.Cox-package.Rd
compound.Cox/man/CG.Clayton.Rd
compound.Cox/man/X.tag.Rd
compound.Cox/man/Lung.Rd
compound.Cox/man/PBC.Rd
compound.Cox/man/dependCox.reg.CV.Rd
compound.Cox/man/dependCox.reg.Rd
compound.Cox/man/compound.reg.Rd
compound.Cox/man/cindex.CV.Rd