compound.Cox-package: Univariate Feature Selection and Compound Covariate for...

Description Details Author(s) References


Univariate feature selection and compound covariate methods under the Cox model with high-dimensional features (gene expressions). Available are survival data for non-small-cell lung cancer patients with gene expressions (Chen et al 2007 New Engl J Med), statistical methods in Emura et al (2012 PLoS ONE), Emura & Chen (2016 Stat Methods Med Res), and Emura et al. (2018- submitted). Algorithms for generating correlated gene expressions are also available.


Package: compound.Cox
Type: Package
Version: 3.11
Date: 2018-5-24
License: GPL-2


Takeshi Emura, Hsuan-Yu Chen, Shigeyuki Matsui, Yi-Hau Chen; Maintainer: Takeshi Emura <[email protected]>


Matsui S (2006). Predicting Survival Outcomes Using Subsets of Significant Genes in Prognostic Marker Studies with Microarrays. BMC Bioinformatics: 7:156.

Chen HY, Yu SL, Chen CH, et al (2007). A Five-gene Signature and Clinical Outcome in Non-small-cell Lung Cancer, N Engl J Med 356: 11-20.

Emura T, Chen YH, Chen HY (2012). Survival Prediction Based on Compound Covariate under Cox Proportional Hazard Models. PLoS ONE 7(10): e47627. doi:10.1371/journal.pone.0047627

Emura T, Chen YH (2016). Gene Selection for Survival Data Under Dependent Censoring: a Copula-based Approach, Stat Methods Med Res 25(No.6): 2840-57

Emura T, Matsui S, Chen HY (2018-). compound.Cox: univariate feature selection and compound covariate for predicting survival (in revision, Computer Methods and Programs in Biomedicine).

compound.Cox documentation built on May 24, 2018, 5:03 p.m.