make.structure.plot | R Documentation |
make.structure.plot
makes a STRUCTURE-style plot from the output from a
conStruct analysis.
make.structure.plot(
admix.proportions,
mar = c(2, 4, 2, 2),
sample.order = NULL,
layer.order = NULL,
sample.names = NULL,
sort.by = NULL,
layer.colors = NULL
)
admix.proportions |
A |
mar |
A |
sample.order |
A |
layer.order |
A |
sample.names |
Vector of names to be plotted under each sample's
admixture proportion bar plot. The index of a sample's name
should be the same as the index of the sample's row in
|
sort.by |
An |
layer.colors |
A |
This function takes the output from a conStruct analysis and makes a STRUCTURE-style plot, where each sample is represented as a stacked bar plot, and the length of the bar plot segments of each color represent that sample's admixture proportion in that layer.
This function has only invisible return values.
# make STRUCTURE-style plot
make.structure.plot(admix.proportions = admix.props)
# make STRUCTURE-style plot, sorted by membership in layer 1
make.structure.plot(admix.proportions = admix.props,sort.by=1)
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