API for conStruct
Models Spatially Continuous and Discrete Population Genetic Structure

Global functions
calc.covariance Source code
calc.lnl.x.MCMC Source code
calculate.laycon.k Source code
calculate.layer.contribution Man page Source code
calculate.qij Source code
calculate.weighted.qij Source code
check.K.arg Source code
check.call Source code
check.coords.arg Source code
check.data.partitions.arg Source code
check.data.partitions.covmats Source code
check.for.files Source code
check.freqs.arg Source code
check.genetic.data.arg Source code
check.geoDist.arg Source code
check.parallel.args Source code
check.spatial.arg Source code
check.xval.call Source code
compare.two.runs Man page Source code
conStruct Man page Source code
conStruct-package Man page
conStruct.data Man page
data.block Man page
drop.invars Source code
drop.missing Source code
end.parallelization Source code
fit.to.test Source code
frob.mn Source code
get.MAP.iter Source code
get.admix.props Source code
get.alpha.params Source code
get.conStruct.chain.results Source code
get.conStruct.results Source code
get.counted.allele Source code
get.cov.function Source code
get.freqs Source code
get.freqs.onerowperind Source code
get.freqs.tworowperind Source code
get.gamma Source code
get.layer.cov Source code
get.layer.params Source code
get.layer.params.list Source code
get.layer.phi Source code
get.n.iter Source code
get.nuggets Source code
get.null.alpha.params Source code
get.null.phi Source code
get.par.cov Source code
get.par.cov.CI Source code
get.sample.names Source code
get.var.mean.freqs Source code
get.xval.CIs Source code
get.ylim Source code
identify.invar.sites Source code
identify.missing.sites Source code
index.MAP Source code
index.MAP.layer.params Source code
index.MAP.layer.params.list Source code
log.likelihood Source code
make.admix.pie.plot Man page Source code
make.all.chain.coplots Source code
make.all.chain.plots Source code
make.all.the.plots Man page Source code
make.conStruct.results.S3 Source code
make.data.block Source code
make.data.block.S3 Source code
make.data.partitions Source code
make.freq.data.list.S3 Source code
make.layer.params.S3 Source code
make.structure.plot Man page Source code
make.structure.polygon.layer Source code
match.layers.x.runs Man page Source code
measure.frob.similarity Source code
onLoad Source code
parallel.prespecify.check Source code
parallelizing Source code
pick.stan.model Source code
plot.admix.props Source code
plot.gamma Source code
plot.layer.cov.params Source code
plot.layer.covariances Source code
plot.layer.param Source code
plot.lpd Source code
plot.model.fit.CIs Source code
plot.nuggets Source code
pos.def.check Source code
post.process.par.cov Source code
print.conStruct.results Source code
print.data.block Source code
print.freq.data Source code
print.layer.params Source code
process.freq.data Source code
standardize.distances Source code
standardize.xvals Source code
structure.polygon Source code
structure2conStruct Man page Source code
unstandardize.distances Source code
validate.data.block Source code
validate.data.list Source code
validate.model Source code
validate.n.samples Source code
write.xvals Source code
x.validation Man page Source code
x.validation.rep Source code
xval.conStruct Source code
xval.make.data.block Source code
xval.process.data Source code
conStruct documentation built on Jan. 4, 2019, 1:04 a.m.