Nothing
library(shiny)
library(shinythemes)
source("./utils.R")
shinyUI(navbarPage(title = "countfitteR",
#theme = shinytheme("cerulean"),
theme = "www/shiny_paper.css",
id = "navbar", windowTitle = "countfitteR", collapsible=TRUE,
tabPanel("Data upload",
includeMarkdown("readmes/data_upload/1.md"),
fluidRow(column(3, fileInput("input_file", "Choose CSV File with count data:",
accept=c("text/csv", "text/comma-separated-values,text/plain", ".csv"))),
column(3, checkboxInput("header", "Header", TRUE)),
column(2, radioButtons("csv_type", "Type of csv file",
c("Dec: dot (.), Sep: comma (;)" = "csv1",
"Dec: comma (,), Sep: semicolon (;)" = "csv2")))
),
textOutput("ncol"),
includeMarkdown("readmes/data_upload/2.md")
),
navbarMenu("Count data",
tabPanel("Summary",
includeMarkdown("readmes/count_data/2.md"),
DT::dataTableOutput("input_data_summary")
),
tabPanel("Distribution",
includeMarkdown("readmes/count_data/3.md"),
fluidRow(column(3, downloadButton("input_data_distr_plot_db",
"Save chart (.svg)"))),
withCustomSpinner(uiOutput("input_data_distr_plot_ui")),
includeMarkdown("readmes/count_data/4.md"),
dataTableWithSpinner("input_data_distr_tab")
)
),
navbarMenu("Fitted models",
tabPanel(HTML("Mean value (λ) estimates"),
includeMarkdown("readmes/mean_value/1.md"),
fluidRow(column(3, downloadButton("fit_plot_db", "Save chart (.svg)"))),
plotWithSpinner("fit_plot"),
includeMarkdown("readmes/mean_value/2.md"),
dataTableWithSpinner("fit_tab")
),
tabPanel("Coefficients",
includeMarkdown("readmes/mean_value/3.md"),
DT::dataTableOutput("coef_tab")),
tabPanel("Decision",
uiOutput("model_decision"))
),
tabPanel("Compare distributions",
includeMarkdown("readmes/cmp_distr/1.md"),
fluidRow(column(3, downloadButton("cmp_plot_db", "Save chart (.svg)"))),
withCustomSpinner(uiOutput("cmp_plot_ui")),
dataTableWithSpinner("cmp_sep_tab")
),
tabPanel("Save report",
checkboxInput("mean_value_rep", "Mean value estimates",
value = TRUE),
checkboxInput("coef_rep", "Coefficients",
value = TRUE),
checkboxInput("decision_rep", "Decision",
value = TRUE),
checkboxInput("cmp_distr_rep", "Compare distributions",
value = TRUE),
p("Be patient. The generation of the report may take few minutes."),
downloadButton("countfitteR_report_download",
"Save report")),
tabPanel("Settings",
includeMarkdown("readmes/settings/1.md"),
fluidRow(column(3, checkboxInput("sep_exp", "Separate experiments:", TRUE)),
column(2, numericInput("conf_level", "Confidence level:", 0.95,
min = 0, max = 1, step = 0.01))
),
fluidRow(column(3, checkboxGroupInput("chosen_models", "Count distributions",
choices = c("Poisson" = "pois",
"NB" = "nb",
"ZIP" = "zip",
"ZINB" = "zinb"),
selected = c("pois", "nb", "zip", "zinb")
)))),
tabPanel("About",
includeMarkdown("readmes/about.md")),
tabPanel("Help",
includeHTML("readmes/manual.html"))
))
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